Ctenopharyngodon idella (grass carp): 127524761
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Entry
127524761 CDS
T08802
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127524761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127524761
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127524761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
127524761
NCBI-ProteinID:
XP_051772587
LinkDB
All DBs
Position
2:complement(24669999..24689873)
Genome browser
AA seq
1137 aa
AA seq
DB search
MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGMLSNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDIETNSVAAIPGMGIPEQLKAAMEQEQTGKEMAAEPEMSIPGLDWGMEE
VMLKDQKKPPTKKVPYAKPIPAQFQQAWAENKVPAMPPGEVPKERKDEKKVDGKKKTQAE
IEQEMAALQYTNPMLLEQLKIERMAQLQEQGMPPPAGQSGPVPPFPGQGGPMPPPTQGFP
QSMPPQQMPHNMPPVGPGGIPGPFIPPGQMGPPGPMHQGPPPQGMMGPPDMHGPPRHPGP
HRNMGPQGPPGMPPGPRGMQGPPPGGMPPGSGGPPGNMMGPPPRGQGPPQGGMMHQDMRG
PVPHGNMIGHQGPMPGSMMGPPPRTHSNMQGMGNMHGMGPPPGGMHGPPNSMQGPPGNMQ
GLPPYLQGKPPHLGDGNRGQFNQGQNPGPQSMMHGMGQQGPNGKGDAPRGPPNHHMGPPP
ERQGPGGPGQGSDGGQYWGDDGGYQEGWRRGPGGPGQEYSGGHRGSSGSQWEGQERFSSH
DGEYMGHDRYDGYEGSGEEFDQRQRRPPHGDDSYRRGGPSGRGGIGGFQDEYGGDESFDS
QEDMGQGWGGRGRPRGGPPRGGGVGRKGLLPTPDDYPSHYEGGRNQEGWEGGRDSGHESY
RDGQRPDHSMHDSPSPASRERSSSLQGMDMASLPPRKRPWHDGPGTGDMDSPGAVPDDRG
AGRPSPRDEGGYGPPSRGGRGGWGRGGPPNPSGPGPNVGPNARRGAQRGVMRGGRGR
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagatatcggctcacctccccggttcttccatatgcctcggttccagcaccag
gcacctcgtcagctgttctacaagaggccggactttgcccagcagcaggccatgcagcag
ctcacttttgatggcaagcgcatgaggaaagctgtcaaccgcaagaccattgattataat
ccatctgtcatcagatatcttgagaatcgattgtggcagcgagatcatcgagatttccgt
gctattcaaccagatgctggctgctacaatgacctcgttcctccagttggtatgcttagt
aaccctatgaatgctgttacgacaaagtttgtcagaacctccaccaacaaagtcaaatgc
cctgtgtttgttgttcgatggactcctgaaggcaggcgacttgtaactggtgcctccagc
ggggagtttactttatggaacgggctcacatttaactttgagacaattctgcaggctcat
gacagccctgtcagggcaatgacctggtctcacaatgacatgtggatgttgactgccgac
catggaggttacgtgaagtactggcagtccaacatgaataacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgccacttgc
tctgatgatggaactgtacgcatctgggactttctgcgctgtcatgaggaaagaattctg
agaggtcatggagcagatgtgaagtgtgttgattggcatcccacaaagggcttggtggtg
tccggcagcaaagacagccagcaacctatcaaattttgggacccaaagactggacaaagt
ttggcaacactacatgcgcataaaaacacagttatggaggtgaagtggaacctcaatggc
aactggctgttgacagcgtcacgtgaccatttatgcaaactgtttgacatccgcaatctc
aaagaggagctacaggtttttagaggacacaagaaagaagccacagctgtagcctggcac
ccagttcatgaaggcctgtttgccagtggaggttctgatggatcgctgctattttggcat
gcaggtgtggagaaagaagtgggaggaatggagatggctcatgaaggaatgatctggagt
ttagcctggcatccactgggccacatcttgtgttctgggtctaatgaccacaccagcaaa
ttttggacaaggaatcggccaggggacaagatgcgggacagatacaacctgaacttgttg
cctggaatgtcagaagatgggatggaatatgatgacatagagaccaatagtgttgccgcc
attcctggcatggggatcccagaacaactgaaggctgctatggaacaagaacaaactgga
aaagagatggcagcagagcctgagatgagcatcccagggctggactggggaatggaagag
gtcatgctgaaggaccaaaaaaagcccccgactaaaaaagttccttatgcaaaacccatt
ccagctcagtttcaacaggcctgggcagagaataaggttccagcaatgcctcctggagag
gttccaaaggaaaggaaggatgagaagaaagtagatggcaagaagaagacgcaagcagag
attgagcaggaaatggctgcccttcagtatacaaacccaatgttgctcgagcaactaaag
attgagcgaatggcacaattacaagaacagggaatgcctccccctgctggacagtcaggg
ccagtgccgccctttccagggcagggtggtccgatgccccctccaacacaaggcttccct
caatccatgcctccacaacaaatgccgcacaacatgcctccagtgggaccaggtggaata
cctggtccattcatacctccaggccaaatgggtccacccggacctatgcaccagggtcct
cctccacagggcatgatgggacctccagacatgcatggacctccacgtcatcctggccct
cacaggaacatgggaccccagggtcctcctggcatgccacctggtcccagaggtatgcaa
ggacctccccctggaggaatgcccccaggttctggtggacctccaggcaatatgatggga
ccaccaccacgaggacaggggccgccacagggaggtatgatgcatcaggacatgaggggg
cctgtgcctcatggaaacatgataggccatcagggacctatgccagggagtatgatgggg
cctccacccaggactcatagcaatatgcagggcatgggaaatatgcatgggatggggcct
cctccagggggtatgcatggaccaccaaacagcatgcaaggacctccaggcaatatgcag
ggccttccaccatatttgcaaggcaaaccaccacacctgggtgatggaaaccgaggacag
ttcaaccagggacagaatcctgggcctcagtcaatgatgcatggaatgggacagcagggt
cctaatgggaaaggagatgctcctcgaggaccacctaaccaccacatgggacccccacca
gagcgacaaggcccaggaggacctggtcagggctcagatggaggccagtactggggtgat
gatgggggttatcaagagggctggagaagaggccctgggggtccaggacaggaatactct
ggaggtcacagaggaagctctggaagccaatgggagggccaggaaaggttttcttcgcat
gatggagagtacatgggacacgacaggtatgatggttatgagggttctggtgaggaattt
gaccagaggcagagacggccaccacatggagatgattcataccggaggggtggcccaagt
ggacgtggtggaattgggggcttccaagatgagtatggcggagatgagagctttgattcc
caagaagacatgggccaaggatggggaggtagaggaagaccgcgtggtgggccaccaaga
ggaggtggtgtaggaagaaaggggcttctcccaactcctgatgattatccctctcactat
gaaggaggaagaaaccaggagggctgggagggagggcgagattcaggtcatgagagttat
cgggatggtcagcggccagaccacagtatgcatgacagtccttctccagccagtagagag
cgttcttcctctctacagggaatggatatggcctcgctgccaccacgcaaacggccatgg
catgacggaccaggcactggtgacatggactcccctggtgcagtgcctgatgacagaggc
gcaggtcgaccgtcaccaagagacgaaggtgggtatgggcctccatcacggggaggaaga
ggtggttggggacgtggtgggccacctaacccaagtggtcctggtcccaatgtgggtcca
aatgccagacgaggggctcaacgcggcgttatgcgaggaggtcgcgggcggtag
DBGET
integrated database retrieval system
