Ctenopharyngodon idella (grass carp): 127524951
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Entry
127524951 CDS
T08802
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127524951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127524951
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127524951
mRNA cycle factors
Common to processing body (P body) and stress granule
127524951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
127524951
NCBI-ProteinID:
XP_051773005
LinkDB
All DBs
Position
2:complement(7608869..7627926)
Genome browser
AA seq
1171 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLCKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFSNEADEHSYSSDEQISWIQLLGLFMSFLGVMLSRALLNKNREEIMGECPL
PAIKVSLDWLRLRPSVFNESAMDKRQYIWPWLVSILNSFQPKEEDVSHASVIPLPEEFEL
QGFLALRPALRMLDFSKGHQSVVVGKESLLVHSRHQRLISLGKWVADNQPRLIQCRISDG
LLLFITDIPEMVVEEPQEKDTPVLQESSNGEQTPNDSTQGLKSVLSAGKNQNSALDGSER
PVVTFKENIKPREQSREQNRSQHQRDAGKDRAAFNKGNGIQGKSEQKKEGKRKSEVKKNS
HDKTTDAGKQVKTQTEMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFP
PPAYVIPPPVAFSMSPGFTFPTGVSVPAPFLQTASHPQSANPVQTGKPSHIPYSQQRPSG
PGALNQGPPQPQQTQPPPPQPSQQALQQSVQLQVQQQQQQQSPTKQSSQLGKSPPHHHSM
QQSYMQVPEQPGQMWSQHQTQPTMQKMPMQMPVKQPFFMPTQDPMKLFEHPMSMQPPQPS
MDKKMKFPEVKVQDFYWEPPYHMVGEGRSGMGDRMGKRQPGVFCPDQENMPRGPPYEDNK
SSPLLPPDLLKTLADFEEEEELLFTKPHDFYQALAGPLNSAPGRNMFLPNPSRLDSGADV
IGQSSLLPRFSIQESSYQNNSIFSEAYGKNMAPASKSDAPMMHQEPSLYSLFEGTPWSPS
LPASSDHSTPASQSPHSSNPSSLPSSPPTHSHGSLPFSNFGPIGTPDSRDRRGNDRWKAD
KTGVSGFGLDYLPSASSSSVSENNSWHQGAPTSSWAAQDMPMEDSSTVLLDSFKSIWSSS
MMQPGPSALEQLLMQQKQKQQRGHGNMNPPH
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatacttacggcaggcagaggccctgaaggctgacatgacagat
tctaagcttggtgctgcggaggtctggacatcaaggcaggctcttcaggacttgtaccag
aaaatgctggtgacggacctggagtacgccctggacaagaaagtggaacaagatctctgg
aaccatgctttcaagaatcaaataacaacactacagagtcaagctaagaacagggccaac
cccaatcgaagtgaagtacaggccaatctctccctgttcctggaggcagctagtggattc
tacacacaattgttgcaggagctgtgcacggtgtttaatgtggacttgccatgccgtgtg
aaatcatctcagcttggcatcatcagcaataaacagagcagcaccagcgccatagtgaag
ccccagcccagctcctgttcctacatctgccagcactgtctcgtccatctcggagatatt
gcacgttatcggaaccaaactagccaggctgagtcgtactacagacatgcagctcaactt
gttccctcaaatggtcaaccttacaatcagctggccatattggcctcctccaaaggagac
caccttacaacaatcttctactactgcaggagcattgctgtcaaattcccatttcctgct
gcctccaccaacctacagaaagctctttccaaggcccttgaaagtcgtgatgaggtcaaa
acgaaatggagcgtgtctgatttcattaaggcctttatcaagttccacggccatgtttat
ctctgcaaaagcctagataagctgaacaccctgagagagaaactagaggagcagttccag
aggctgattcttcagaaagccttcagctcccagcagctggtccacatcacggtaataaac
ctgtttgaactgcaccacctcagagacttcagcaatgaggcggatgagcacagctacagc
tcggacgagcagatcagctggatccaactccttggcctcttcatgtctttcctgggcgtg
atgcttagccgagctttactcaataagaaccgagaggagatcatgggggagtgccctctt
cctgccatcaaagtgtctctggattggctgaggcttcgacccagtgtgtttaatgaaagt
gccatggacaagcgacagtacatctggccatggctggtgtccattctgaacagctttcag
cctaaggaggaggatgtgtctcatgcgtcagtgattccactgcctgaggagtttgagctg
caaggctttctggcccttcgccctgctttacggatgctagacttctctaaagggcatcag
agtgtcgtggttggcaaagagagcctgttagttcattcccgacaccagagactcatcagc
ctgggcaagtgggtggctgacaaccaaccacggttgatccagtgtcgcataagtgatggc
cttctgctcttcatcactgatatccctgagatggttgtggaagagccacaggaaaaagac
acacctgtcctccaggagtcctctaatggtgagcagacccccaatgacagcacccagggc
ctgaagtcagtcctctccgccggaaagaaccagaacagtgcgctggatggcagtgagaga
cctgtggtcaccttcaaggagaacattaaacctcgagagcagagtagagaacagaaccgg
agccagcaccagagggatgcagggaaggacagagctgcatttaacaaaggaaatggaata
caagggaagagtgagcagaagaaagagggcaagagaaagagtgaggtgaagaagaacagt
catgataaaacaacggatgctgggaaacaggtgaagacgcagactgagatgaggaagact
ccagtgtctgaggcaaggaagactccagtcacacagactcaaaccacatgctcttcacag
tttatccccatccaccaccctggagctttcccgcctctgcccagcagaccaggcttccct
ccaccagcatatgtgatccctcctcccgtggcattctccatgagcccgggcttcaccttc
cccacaggtgtatccgtacctgcacccttcctccagactgcctcccaccctcaatctgcc
aatccggtgcagacagggaaaccctcacacattccctacagccagcagaggccctcgggc
cctggagccctaaaccaaggccctccccagcctcagcagacacagccgccccctccacaa
ccatcccaacaagccttgcaacaatctgtgcagctccaagtacagcaacaacaacagcag
caatcgcccaccaagcagagttctcagctcggcaaaagtccaccacatcatcacagcatg
cagcagtcatacatgcaggtgcctgagcagcctggtcaaatgtggagccagcaccaaaca
cagcccaccatgcagaaaatgcccatgcagatgccagtcaaacagcctttcttcatgccc
acccaggacccaatgaaactctttgaacacccaatgagcatgcagccccctcagcccagc
atggacaagaagatgaagtttccagaggtcaaagtgcaggatttctactgggagccacct
taccatatggttggagagggcaggagcggaatgggggacaggatgggcaaacgtcagcct
ggagttttctgtcccgaccaggagaacatgcccagaggccctccatatgaagacaacaag
agctcccctcttctgcccccagacctgttaaagactctggcggactttgaggaagaggag
gagctgctctttactaaacctcatgatttctaccaggccttggctggccctcttaattct
gctcctggaaggaacatgtttttgccaaatccgtcgcgactagacagtggagctgatgtg
attggccagtcctctcttctcccccgattttccattcaggagagctcctaccagaacaac
agtatttttagcgaggcatacggtaaaaatatggcccctgcgtctaagtcagatgcaccc
atgatgcaccaggagccctcactctactccctatttgaaggaaccccatggtccccctcc
cttcctgctagctcggatcactcaacaccagccagccagtcccctcactcttccaaccca
agcagcctgccttcatccccacccacccacagccacggctccctgcccttctccaacttc
ggccccattgggacgcctgacagcagagaccggcgcggaaacgaccgctggaaggccgat
aagactggtgtgagtggctttgggttggactacctgccttctgcctcgtcctcctctgtg
tcagagaacaacagctggcaccagggggcgccaaccagcagctgggcagcccaggacatg
ccaatggaggactcctctactgtcctccttgacagtttcaagtcaatctggtcgagctct
atgatgcagcccggtccgtctgcgctggagcagctcctgatgcagcagaaacagaagcag
cagcgcggccacggcaacatgaacccgccacactga
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