Ctenopharyngodon idella (grass carp): 127524965
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Entry
127524965 CDS
T08802
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04510
Focal adhesion
cide04512
ECM-receptor interaction
cide04518
Integrin signaling
cide04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127524965
04518 Integrin signaling
127524965
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127524965
09142 Cell motility
04820 Cytoskeleton in muscle cells
127524965
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cide00535
]
127524965
Proteoglycans [BR:
cide00535
]
Extracellular matrix (ECM) proteoglycans
Others
127524965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127524965
NCBI-ProteinID:
XP_051773023
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Position
13
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AA seq
922 aa
AA seq
DB search
MIWREVCLYLLCNVIKQCISTGLHAHVMPFSSMSHLQTDQTVCPQTKDGNGLFPGFYIMT
QFNIAEMARRGMVKKVPGTTSQHVAYKIGPEFNFRINTRSAFPMGLPEEFAFSATYRMIG
NTPNKSWNMWQMRDLNGKEQLAVRLNGEALSVEFSYRTQENRVMTALFPYQTHLFNSQWH
NILLLVKKGSVSLITDCMATDSQQLAPRGQVNLDGFTHIGKLKDNSAIAVPFELQSMLIH
CNLNIPQRDTCGDLPARRQITEAELKRAGAGPPGPPGVPGIDGIAGERGDPGEEGSAGPD
GDTGKPGSAGLPGLPGADGLTGPIGEPGLDGPPGQKGEPGKPGPRGEAGVGPDGPIGQPG
PGGLPGELGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCPNACPVGAPGHPGLP
GMKGHKGVKGEAGEPGKQGHKGEEGDQGAPGEVGAQGPTGPQGIRGATGMIGSKGELGLR
GVDGDPGPQGVAGATGDRGQRGGIGEAGPKGEQGPQGPRGNTGLPGPKGDGGLPGVDGRE
GIPGMPGAKGTTGKAGSPGEVGLQGLPGLPGSPGPKGGAGEKGNAGQPGLIGTMGSAGRA
GERGEQGELGPIGPIGQPGDRGEQGPPGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDR
GEAGEPGPKGEQGDQGAEGTPGDKGDLGDPGQPGAKGEVGNQGDPGNRGPEGARGQPGIE
GPPGSPGPRGMQGNRGAPGPRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAGSLRRPES
GAVGLPGKPGPPGPPGPPGDSGFPGHAGARGLPGLKGPPGLLGIKGPKGEMGDRGDRGPT
VRGPKGMPGPPGLPGEPGKPGYGQDGRDGERGLPGSPGQPGVPGPPGSAGPPGYCDPSAC
NLSAGAAHQSLKDSSMKGPGGN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagggaagtttgtctctacctgttgtgtaatgtgatcaaacaatgcatctcc
actggtcttcatgcacacgtcatgccattttccagtatgagccacctgcagacagaccaa
actgtgtgtcctcagactaaagatgggaatggcttatttccaggattttacataatgact
cagttcaacattgctgaaatggccaggagagggatggtgaagaaggtgcctggaacaaca
tctcaacatgtagcatataagattggccccgaattcaacttcaggatcaacaccagatct
gcatttcccatggggctgcctgaggaatttgcattttctgcaacctatcggatgattggc
aatacaccgaataagagctggaatatgtggcaaatgcgagatctgaatggaaaggaacag
cttgcagtcagactcaatggggaggccctgtctgtggagttctcatacagaacccaggag
aacagagtgatgacggctttattcccttaccaaacacatctcttcaattctcagtggcac
aacattttactgcttgtcaaaaaaggctctgtgagtctcataacagattgtatggcaaca
gattcacagcagctggcaccaagaggacaagtaaacctagatggattcacacatattgga
aaactgaaggacaattcagcaatagctgtgccgtttgagctgcagtcaatgctgattcac
tgcaacttaaacatcccgcagagagacacatgcggtgaccttcctgcaaggagacagata
accgaggcagagcttaagagggctggtgccggccctcctggtcctcccggtgtgcctgga
atagacggcattgctggggagagaggagaccccggtgaagagggttcggctggtcctgat
ggagatactggaaaacctggttctgctggacttcctggattacctggagccgatggattg
actggccctataggagaaccaggccttgatggccctccaggacaaaagggagaacctggc
aaacctggacccagaggagaggcgggtgttggacctgatggaccaattggacaaccagga
ccaggaggacttccgggcgagctgggaaaagtgggaccccctggagcaatgggtgtgaga
gggccacagggaccccgtggaccaacagggccccgtggtgctgcagggatgctgggagga
acaatggaactgtgccctaatgcttgcccagttggtgcacctggtcatcctggtttgcct
gggatgaagggtcataaaggggtgaaaggagaagccggagagcctggtaaacaaggacac
aagggagaggagggagatcagggggcacctggagaggtcggcgctcaaggcccaactggg
ccgcagggaattcgaggtgccactggtatgattggctccaaaggagaactgggccttcga
ggtgttgatggtgacccaggccctcagggggttgcaggggcgacgggggatcgaggccaa
agaggaggaataggagaagctggacctaaaggcgaacagggacctcaagggccaagaggc
aacacaggtcttccagggccaaagggagatggtggtttgccaggtgtggatggacgtgag
ggaatccctggcatgccaggtgccaagggtaccactggaaaagctggaagccctggggaa
gtcggccttcaaggactccctggtttaccaggaagcccagggccaaaaggtggagcagga
gagaagggtaatgcaggacaaccaggcctcattggcacgatgggatctgcaggcagagcg
ggtgagcgtggagaacaaggagaattgggacccatcgggcctattggacagcctggagac
agaggagagcaggggccacctggaccaatgggaaaaccaggagccagaggtccgaaaggt
gacttgggcttgcctggacttcctggaccgccaggcctgccaggaataaaaggagatagg
ggtgaagcaggtgaacctggaccaaagggagaacagggagatcaaggtgccgaaggaacg
ccaggagacaagggagatcttggtgatcctggccaacctggagctaaaggcgaagttggt
aaccagggagatccgggtaatagagggccagaaggtgcccgtgggcagcctggcattgag
gggcctcctggtagtcctggaccacgtggcatgcagggaaacagaggagctccaggacct
cgtggctcccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtgtgc
atgcgggttatgcaagagcagctggcccagttggctggcagtctgaggagaccagagtct
ggagcggtcggactgccaggcaaacctggtccccctggtcctcctggacccccaggtgac
agcggcttccctgggcatgctggtgcaagaggacttccgggactcaaagggcctccggga
cttctgggtatcaaggggccgaaaggtgagatgggagacagaggggacaggggacctaca
gttcgaggacccaaaggcatgccgggacctcctggattaccaggtgaacctggaaaaccg
ggatacggtcaagacgggcgtgatggagaaaggggtctacctggttccccaggtcagccg
ggcgttcctggacctcccggttcagcaggaccacccggttactgcgatccttcggcctgt
aatcttagcgcaggcgccgcccaccagtctctgaaagactctagcatgaagggaccgggc
ggaaactaa
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