KEGG   Ctenopharyngodon idella (grass carp): 127525100
Entry
127525100         CDS       T08802                                 
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
  KO
K14571  ribosome biogenesis ATPase
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    127525100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cide03009]
    127525100
Ribosome biogenesis [BR:cide03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    127525100
SSDB
Motif
Pfam: AAA AAA_lid_3 Nucleolin_bd RuvB_N AAA_16 AAA_22 AAA_5 AAA_2 AAA_14 AAA_33 TIP49 NPHP3_N AAA_28 Mg_chelatase RNA_helicase AAA_17 AAA_18 nSTAND3 Rad17 IstB_IS21 TsaE ABC_tran Viral_helicase1 Vps4_C Zeta_toxin NACHT ATPase AAA_3 Cytidylate_kin2 Sigma54_activ_2 DUF815 Ribosomal_L19e
Other DBs
NCBI-GeneID: 127525100
NCBI-ProteinID: XP_051773309
LinkDB
Position
13:30436536..30456206
AA seq 821 aa
MKNRSAYNIDPRLKHRVHQYLKTHNDPYVDISAMASELQQQFRIEYGRRNRTAFRIQVEK
VHAAICSESDISLLENKHLAKRARRSREDGDNSHVTEYSTDSEDDIPEHEHTNHMNSSLT
SLYQRGASHAAGGSTPQKSDSDGWIIDKTGNKGQENICIDLCEEESTSAANTNEDLFDEL
RGHLIHTHAATSRSGKKQRDPSKEKKSKSGKQRGVKKSKHDEDAEISAAILTKKSKVKVH
ELQYSTVKFEDFGGSEETLEEVCKLLIHMRHPEVYQRLGVVPPRGFLLHGPPGCGKTLLA
QAVAGETGLPMLKVSAPELVSGVSGESEQKLRELFEQAISSAPCIMFIDEIDAITPKREI
ASKDMERRIVAQLLTCMDDLNSLSEPAQVLVIGATNRPDSLDPALRRAGRFDREICLGIP
DEGARLKILKTLCRKITLPEDFDYRQLARLTPGYVGADLMALCREAAMTAVNRILLKSSS
EDGTPPKGELEQLLALLKTNESLNEEQLSGLCVVMSDFKTSLARVQPSAKREGFATVPDV
TWEDVGALQDIREELNMAIMAPIHNPEHFKALGLNAPAGVLLAGPPGCGKTLLAKAVANE
SGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSEHESGAS
VRVVNQLLTEMDGMENRRQVFMMAATNRPDIIDPAVLRPGRLDKTLYVGLPPAADRHAIL
VTITKGGTRPHLDSDVSLEEIAHDARCESFTGADLSALVREASVNALRVHLNAGPAQTHT
EPVKDIRVSRVHFEEAFKKVRPSVSKKEQLMYEKLKDTLTR
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgaagaaccgcagcgcttataatatagacccgagactcaaacacagagtccatcagtac
ctgaaaacacacaatgatccgtatgtggacatttcagccatggcctctgagcttcagcag
cagttcaggattgagtacggccggaggaacaggacagccttcaggattcaagtggaaaaa
gttcatgcagccatatgcagtgagtctgacatctctcttctggaaaacaaacatctggcc
aaaagagcgagacgcagccgagaggacggggacaacagtcacgtcaccgaatacagcact
gacagtgaggacgatattcctgaacatgaacacacaaatcacatgaacagctcgctgacg
tcgctctaccagagaggagcgtctcacgcggccggcggctcgacccctcagaagagcgac
agcgacggctggatcatcgataagactggaaacaaaggacaggagaacatctgcattgat
ctgtgtgaggaagagtccaccagcgctgcgaacacaaatgaagatctttttgatgaactc
cgagggcatctgatccacacacatgcagcaacgtcaaggtccggaaagaagcagagagat
ccatcgaaggaaaagaaatcaaagagcgggaagcagaggggagtgaagaagagcaagcat
gacgaggacgcggagatcagtgctgcaatactgacgaaaaagagtaaggtcaaggtccat
gagcttcagtactccactgtgaagtttgaggatttcggcggcagcgaggaaactctggag
gaagtgtgtaaactgctgatccacatgagacatccagaagtgtaccagcggctgggagtc
gttcctccgcgaggattcctcttgcacgggccgccgggatgtgggaagacgctgctggct
caagccgtggctggagagactggtttgcccatgctgaaggtctcagcgccggagctggtg
tctggagtctctggagaatctgagcagaagctgcgggagctgtttgagcaagccataagc
agcgctccctgtatcatgttcatcgatgagattgatgccatcactccaaaacgagagatc
gcctccaaagacatggagagaaggatcgttgctcagttactcacctgcatggatgacctc
aattcgttatcagagccagctcaggtcttggttattggagccactaaccgtccggactca
ttggatccggccctgcgtcgagccggcaggtttgaccgagagatctgtctggggattcct
gatgagggcgcacgactgaagattctgaagacactctgtcggaagatcacgctgccggag
gattttgactacagacagttggcgcgtctcacaccaggttatgtgggcgcagatttaatg
gcgctgtgccgtgaggcggccatgacagccgtcaacagaatcctgctgaagtcgagcagt
gaagacggcactccaccgaaaggtgagctggagcagctgctggcattgctaaagacgaac
gagtctctgaacgaggagcagctttctggactctgcgttgtcatgtcagacttcaagacg
tcgttagccagagtccagccatccgctaagcgtgagggctttgccaccgtaccggacgtg
acctgggaagacgtgggcgccctgcaggacatccgcgaggagctcaacatggccatcatg
gctcccatccataacccggagcatttcaaagctctgggtctcaatgccccagctggagtg
ctgctcgccggaccgcccgggtgtggaaagaccctcttagccaaagctgttgctaatgag
tctggcttgaacttcatctctgtcaagggtccagagctgctgaatatgtatgtaggcgag
agcgagagagccgtccggcaggtcttccagagaggccgtaactcagcgccgtgtgtcatc
ttttttgatgagattgatgctctttgtcctcgtcgctcagagcatgagtcaggagccagc
gttcgtgtggtaaaccagctgctcactgagatggacggcatggagaatcgccggcaggtt
ttcatgatggctgccaccaacagaccagatattattgatccggctgtgctcagaccggga
cgactggacaaaactctgtatgtgggtttgccgcccgccgcagacagacacgccatatta
gtcaccattactaagggtggcaccagaccacatctagactctgatgtcagtcttgaggaa
attgcccatgatgcacgttgtgaaagttttacaggtgcagatctgtcggcgctggtgcga
gaggcgagtgttaacgctctgagagttcacctgaatgcaggaccagcgcaaacacacaca
gagccagtgaaggacatcagagtgagccgggttcacttcgaggaggccttcaagaaggtg
cgaccgtctgtgtccaagaaggagcagttaatgtatgaaaaactgaaggataccctcaca
agatga

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