Ctenopharyngodon idella (grass carp): 127525123
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Entry
127525123 CDS
T08802
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127525123
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
127525123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TPR_Trm732_C
TOR1L1_N
Vac14_Fab1_bd
HEAT_2
HEAT_EZ
Arm
Motif
Other DBs
NCBI-GeneID:
127525123
NCBI-ProteinID:
XP_051773385
LinkDB
All DBs
Position
13:complement(3973122..3997661)
Genome browser
AA seq
1860 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTFLRSPNWDTRI
AAGQAVEAIVKNIPEWNPAPKPKDEMCPEDMSPEDVSSDRLSFYRFDISRLLKHGASLLG
SAGAEFEVQDDKSGETDPKERLARQRKQLQKKLGLDMGAAIGMDTEELFNDEDLEDACAS
STNRSQPGKSLGCHFSRNHLTTAELIDSQFRPGMSNRQKNKAKRMAKLVAKQRSRDMDPN
EKSNDSFEGEPEEKRRKTTNVVIEQPATDSKVLIDNVPDNSSLFEETQEWPLESFCDELC
NDLFNPSWEIRHGAGTGLREVLKCHGAGGGKTVGSTAEQMERQHQEWLEDLVIRLLCVFA
LDRFGDFVSDEVVAPVRETCAQTLGVALKHMANSGVAMTVDILLKLLTEDQWEVRHGGLL
GIKYVLAVRQDLITELLPRVLPAITEGLRDLDDDVRAVAAAALIPVVDGLVQSQPVKVPF
IVDTLWNALLELDDLTASTNSIMTLLSSLLTYPQVRQCSTHQSLTVLVPRVWPFLRHTIA
SVRRAALETLFTLLSKADQSCAVWLNPIMQDMLRHIFQSCILESNQEILELIQKVWGELL
QQAPQQYVVAASCPWMGAWLCLMMQAPHIPIDPNMLLEVKARLKEKASGKTRQGSVPVKE
TVQEYIGGAETITEDPATRDYVVTRARLMAAKLLGVLCNCICDPRLNSSSQELRPAESLA
QLLLFHLNSKSALQRIAVSMVICEWAGLQKECELLSSVVQPRLLLILSEQLYYDEIAIPF
TRMQNECKQLIALLADAQIDVRERINSTVFTIDQANELVTTIFSECTSSLNLKSRQFQPL
DSKRLQAHSTVCETSAEWQQLQLRVHTFTACAVVGLAMLPDKLNPVVRPLMEAARREENI
LVQGYAASNIARLLQLCAARSPCPNAKIVKNLCSSVCVDPLLTPNAACPVPPASTPAIQE
SSKGSVAEKDAMHHMVNKTKGIITLYRHQKAAFAITSKRGPTPKAPKTNTNNDLPLGGSI
TPETDESKKPCLIQRRGAEFCLMTVARHFGQELTKTLPYLWEFMTGPLRNALNAHGFDSS
QLLKQGDSIAQELVNSLQVLEVTAGAMSQELIPVLMEQLPLLCTCLQHPYTAVRHMAARC
VGMLSKIATMETMNVFLEHVLPWLGAIDDNTKQEGAIEAMACVMEQLDVDIVPYIVLLVV
PVLGRMSDPCDSVRFMATQCFATLIRLLPLEAGIPDPPSMSEDLIRQKARERHFLEQLLD
GRKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDH
FLRTQEYTKTKAPDCCPLPSIVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERARL
QHQVKKHNLIVASYDVVRNDIDFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRI
ILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAM
EALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVIS
TTSTQEDEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHIIEQLSSQHSNLRD
IQHAPKLSALKQLLLDCGLGSSGASDGGTEAVVAQHRVLIFCQLKSMLDIVEQDLLKSQL
PTISYLRLDGGVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWN
PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENASLQSM
GTEQLLNLFTLDKDEAEKNEASSSSGKASMKSVLDGLGDLWDQQQYENEYDLDSFIHSLK
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcaaggttggaacgtctatttatcttattggatacaggaacgactcctgtt
acccgtaaagcagctgctcagcagctgggagatgttgttaagcttcacccacatgagctt
aataacctgctatcaaaggttttaacattcttgaggagtccgaactgggatacgcgaatc
gcagcgggacaggctgtcgaagccatagtgaagaatattccggaatggaacccagctccg
aagccaaaagacgagatgtgtccagaagatatgtctccagaggatgtctcttcagacagg
ctgagtttctacaggtttgatatctcccgtctgctcaagcacggagcgtcgctgcttggc
tcagcaggagcggaatttgaggtgcaagatgataagtcaggtgagacggatccgaaagag
cgtttggcccggcagagaaagcagttgcagaagaagttgggattggatatgggtgctgcg
atcggcatggacacggaggagctttttaatgatgaggacctggaggacgcttgtgcctcc
agtaccaacagatcacagcctggtaaaagcctgggctgtcacttctcacgcaaccatttg
acgactgcagagctcatagattcacagtttcgtccaggcatgagcaatcgacagaagaac
aaggccaagaggatggcgaaactggtggcaaagcagagatccagagacatggatcctaat
gaaaagagcaatgacagttttgagggagagccagaggagaaacgacggaaaaccacaaat
gtagtcattgagcagccagcaaccgacagcaaagtcttaatcgataatgtccctgataac
tccagtttatttgaggagactcaggaatggcccctggaaagcttctgtgatgaactgtgc
aatgacctcttcaacccctcgtgggagattcgtcacggtgccggcacaggactgagggaa
gtgctgaagtgtcacggtgctggtggaggaaagactgttggcagtacagcagaacagatg
gagcgacagcaccaggagtggctggaggatttggtcatccggcttttgtgtgtctttgct
ttggacagatttggagattttgtgtcagatgaggtggttgcacctgtcagagagacgtgt
gcccaaactctgggagtggctttgaagcacatggcgaacagtggcgttgccatgactgta
gacattctgcttaagctgctaactgaagaccagtgggaggttcgacacggaggcctgctg
ggcatcaaatatgttcttgctgtcagacaggatttgatcacagagctcctgccccgggtt
cttcctgccattacagaaggcctgcgggatctggatgatgatgttcgtgctgtggcagca
gcagctttgatccctgtggtggatggattggttcagtcacagcctgtcaaggttcccttc
atcgtggacacactgtggaatgctctgctggagctggacgatctcacagcttcaactaac
agcatcatgaccctcctgtcctccttgctcacttacccacaggtccgccagtgcagcacg
catcagtctctgacagtgttggttcctcgagtgtggccgttcctgagacataccattgct
tctgttcgtcgggctgccctagaaaccctcttcacactgctttccaaagccgaccagagt
tgtgcagtgtggctgaatcccatcatgcaggacatgttaagacacatttttcagtcctgc
atcctggagagcaaccaagagatcctagagctgatacagaaggtgtggggggagttgttg
caacaggccccgcagcagtatgtggtggcggccagctgtccttggatgggtgcctggctc
tgtttgatgatgcaagcaccacacatcccaatagaccccaacatgctgctggaagtgaaa
gcccgcttaaaggagaaggcttctgggaagacccgacagggatctgttccagtcaaggaa
acggtccaggaatacatcggtggagcggagacaattacagaagatcctgccacacgagac
tatgtggtgacacgtgcacgtctaatggctgcaaagctgttgggggtgctgtgcaattgt
atatgtgacccacggttgaacagctcttctcaggaactccggcccgctgagtctctagct
cagcttttactgttccatctcaattccaaatcggccctgcagcgaattgcggtttctatg
gtgatctgtgagtgggcaggccttcagaaggagtgtgagctgttatccagtgtggttcag
ccccgattgctgctgatcctctcagagcaactctactacgatgagattgccattcctttt
acccgcatgcagaacgaatgcaaacagctcatagcactgctggctgacgcccaaattgat
gtgagagaacgaatcaactccactgtgttcaccatcgatcaggccaatgagctggtgacc
accatcttttcagaatgcacctcctctctgaacctcaagtcacgtcagttccagcctttg
gacagtaagaggctgcaggctcattccactgtgtgcgagaccagtgcggaatggcagcag
ctgcagctgagagttcataccttcaccgcctgcgctgtggtgggactggccatgctgccg
gataaactcaatcctgtggtcaggccactgatggaggcggcccgccgcgaagagaacata
ctcgttcagggttacgctgcctccaacatcgctcgcctgctgcagctgtgtgctgccaga
tctccctgtcctaacgctaagatcgtgaagaatctctgcagctcagtgtgtgtagatccg
ttgctcacccctaacgctgcctgtcctgtcccgccagccagcactccggcaatacaagag
agcagtaaagggtctgtggcagagaaggatgcgatgcatcatatggtgaacaagacaaag
ggcatcatcactctttaccggcatcagaaagcagcttttgccatcaccagtaagagggga
cccacccccaaagctcccaaaaccaacaccaacaatgacctgcccctcggaggcagtatt
actccagaaacagacgagagcaagaagccatgtcttatccagaggagaggggcagagttc
tgcttgatgacagttgccaggcatttcggtcaggagttgacaaaaacattgccatatctg
tgggagttcatgaccggtccgctgaggaatgcgctgaatgctcatggatttgattccagc
cagttgttgaagcagggagactcgattgctcaggagcttgtgaactctctgcaggtgctg
gaggtcacagcaggagccatgtcccaagagctcatccctgtattgatggagcagctgcct
ctcctgtgcacctgtctgcagcatccatacacagccgtacgtcacatggccgctcgctgt
gtgggcatgctcagcaagatcgctactatggagaccatgaatgtgtttctggaacatgtg
cttccctggttgggtgctattgatgacaacaccaagcaggagggagccatcgaagccatg
gcctgtgtgatggaacagttggatgtggatattgtgccctacattgtgcttttggtggtc
cctgtgttgggccgtatgagtgacccctgtgacagcgtgcgattcatggccacacaatgc
tttgctactctaatccgactgcttcctcttgaggctggaatcccagacccaccgtctatg
tctgaagatctaattcggcagaaggccagagaacgacacttcctcgagcagctcctggat
ggaaggaaactggaaaattataagattcctgtgcccatcaaagcagagctcagaaaatac
caacaggatggcgtgaactggctggcatttttgaacaagtacaagcttcatgggatcttg
tgtgatgatatgggtctgggtaaaaccttgcagtccatctgtattctggctggcgatcat
ttcctcaggactcaggagtacaccaagacaaaggctcccgactgttgccctttgccctcc
atagtggtgtgtccgcccacgctgacaggacactgggtggatgaggttgggaagttttgc
tctaaagagtatctcaatcctctgcactatactggcccccccactgaaagagcacggttg
cagcaccaggttaagaaacacaatctcattgttgcctcgtatgatgtcgttagaaatgac
attgactttttcagggatattaaatttaattactgtatccttgatgagggtcacgtcatt
aaaaatggaaagaccaaactctccaaagcaatcaagcagttaactgccaactacaggata
attctctcaggaacgcccattcagaacaatgttctggagttgtggtctctctttgacttc
ctgatgccagggtttcttggtactgaacgtcagtttgctgcacgctatgggaagcccatc
cttgccagtcgagatgctaaaagttcctcacgcgagcaggaagcaggtgtgctggcaatg
gaagcactccatagacaagttctgcccttcctcctgaggagaatgaaggatgatgtgctt
caagatctgccacccaagatcatacaagattactactgcaacctcagtcctctacaggtt
caactttacgaggactttgccaagtctcgcgcaaaggtgaacgtggatgatgtaatctcc
acaacgtctacgcaagaggatgaagagaaacccaaactaaaggccactggacatgtcttc
caggctctgcagtatctgaggaagctgtgtaatcacccagcactggtgctgacccctcaa
cacccagagtacaaacacatcatagaacagctgagcagccaacactccaacctcagagac
attcagcacgccccaaaactctcagccctcaaacagctgctgttggactgtggactgggt
tcatctggagcgtctgatggcggcacagaggctgtggtggcccagcaccgcgttctgatc
ttctgccaactgaagagcatgctggacatcgtggagcaggacctgctcaagtcgcagctg
cccaccatctcctacctcaggctggacggaggcgttcaggccggcctcaggcactcaatt
gtctccaggttcaataatgacccgtccattgatgttctgctgctcactacccatgtgggt
ggactgggattgaatctgaccggggcagatactgtggtgtttgtggagcacgactggaat
cccatgagagacttgcaggccatggaccgagctcacagaataggacagaaacgtgtggtg
aatgtgtatcgtctcatcacacgaggcacactggaggaaaagatcatgggtctgcagaaa
tttaagatgaccatcgcaaatacagtcatcagccaagagaacgccagtctgcagagtatg
ggcacagagcagctgctcaacctcttcacactggacaaggatgaagcagagaagaacgag
gcatcgtcgtcctctggtaaagccagcatgaagtctgttctggatggactgggcgacctg
tgggaccagcagcagtatgagaatgaatacgacctggacagcttcatacactcactgaaa
tga
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