Ctenopharyngodon idella (grass carp): 127525217
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Entry
127525217 CDS
T08802
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04145
Phagosome
cide04510
Focal adhesion
cide04512
ECM-receptor interaction
cide04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127525217
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127525217
09144 Cellular community - eukaryotes
04510 Focal adhesion
127525217
09142 Cell motility
04820 Cytoskeleton in muscle cells
127525217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127525217
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cide04147
]
127525217
00536 Glycosaminoglycan binding proteins [BR:
cide00536
]
127525217
Membrane trafficking [BR:
cide04131
]
Endocytosis
Phagocytosis
Opsonins
127525217
Exosome [BR:
cide04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127525217
Exosomal proteins of colorectal cancer cells
127525217
Exosomal proteins of bladder cancer cells
127525217
Glycosaminoglycan binding proteins [BR:
cide00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127525217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
cEGF
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127525217
NCBI-ProteinID:
XP_051773570
LinkDB
All DBs
Position
13:15935176..15959802
Genome browser
AA seq
1175 aa
AA seq
DB search
MILRRNLCFLPLLLLCIRALPQDGHVEDESIFDLFKISSISRKTIGAKLFKGHDWDSPAY
RFIRFDHIPAVNNLALHQILKQVQNNEGFVFVATMRQDKGSRGTLIGLEGPSGRRQFEIV
SNGRANTLDLVYMVEGSQNVVSFEDVDLSDSQWKNITLYIHGENAHLYVGCSLIDSVILD
EPFYEHLQPESSQMFVAKGSIRENHFRGLLQNVQFLFDAPIENILRNKGCEIAKPEEVNL
VNESIETVSVSTAISTNFIGQKEKLASDVCERSCEELSNMVQELKGLRIIVGNLIDGLQK
VTEENTVMKEVLGNMKNIKDKRMCWQDGRLFEDKEDWVVDSCTKCTCQESKIVCHQITCP
PVACASPTFLDGECCPVCLPKDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATSNPCSG
PSIQTRRCSLGKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPVPQLGGKDCE
GSGRETQKCEAKPCPIDGAWGPWSPWAICSATCGGGTRTRTRVCNSPRPQYGGKKCPGES
KDTDSCNKQDCPVDGCLSNPCFGGVECTSSPDGSWECGPCPVGFRGNGTFCEDVNECDMV
PDLCFKVSESQRCVNTDPGFHCLPCPPRYKGNQPFGMGVEAAKLNKQVCEQENPCKDKTH
NCHRSAECIYLGHFSDPMFKCECKIGYAGDGLICGEDSDLDGWPNQNLVCGANQSYHCKK
DNCPNLPNSGQEDFDKDGQGDACDKDDDNDGIMDEGDNCPLLYNPRQFDYDKDLVGDRCD
NCPYEHNPAQIDTDGNGEGDACSADIDGDEVLNEHDNCPYVYNNDQKDTDMDGVGDQCDN
CPLLHNPDQSDSDNDRVGDECDNNQDIDEDGHQNSLDNCPYIPNANQADHDKDGKGDACD
FDDDDDGIPDDKDNCRLVPNKDQLDSDGDGRGDACKDDFDNDNIPDILDVCPENNAISIT
DFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGIAVGFDEFNSVDFSGTFYVN
TDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTTGTGEH
LRNALWHTGDTPGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADS
GPIYDKSFAGGRLGLFVFSQELVYFSDLKYECRDN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgatactcaggagaaatctctgctttctgcccttgctgttactatgcatcagagcacta
cctcaagatggccatgtggaagatgaatccatcttcgaccttttcaaaatcagcagcatc
agcagaaagacgattggtgccaagctgttcaagggccacgattgggactcgccggcatac
cgcttcatccgctttgaccacatccctgctgtgaacaacctggccctccatcagatccta
aagcaggtccagaacaatgaaggttttgtgtttgtggctaccatgcgacaggacaagggc
tccaggggcaccctgattggtctggagggtcccagtgggaggcgtcaatttgagattgtg
tccaatgggcgcgccaacaccctggatctggtctacatggtcgagggatctcagaatgtg
gtgtcctttgaggatgtggatttgtctgattcgcagtggaagaacatcacgctgtatatt
cacggagagaatgctcacctgtacgtaggctgtagcctcattgacagcgtgatcctggat
gagcctttctatgagcacctgcagccggagagcagtcagatgtttgtggctaagggatct
atcagggaaaaccacttcaggggtttactacagaatgtgcagttcctttttgacgcaccg
atagagaacatcctgagaaacaaaggttgtgagatcgccaagcctgaggaagttaacttg
gttaatgaaagtatagagactgtgtctgtcagtacggccatctccaccaacttcattggg
cagaaggagaaactggcatcggacgtgtgtgagcgttcctgtgaggagctcagcaacatg
gtgcaggagctcaaaggtctccgtatcattgtgggcaatctcatcgatggcttgcagaaa
gtgactgaggagaacactgtgatgaaggaggtgctggggaacatgaagaacatcaaagac
aagcgcatgtgctggcaagacggccgtctctttgaggataaggaggactgggttgtggac
agctgcaccaagtgtacctgtcaggaatcaaagattgtgtgccatcaaatcacatgtcct
ccagtagcctgtgccagccctactttcctagatggcgaatgctgtcctgtgtgtctgcct
aaagacagcgaggacggctggtcgccttggtctgaatggacggagtgtaccgtcacatgt
ggaacaggcacccagcaaagaggcaggtcatgtgatgccacaagtaacccctgcagcggc
ccgtccatccaaacccgcagatgcagcttgggaaaatgcgacagtcgtgtccgacaagat
ggtggttggagtttgtggtccccctggtcatcatgctctgtgacatgtggagagggacaa
atcacacgaatacgccactgcaacgcccccgtccctcaactgggaggaaaggactgtgag
ggcagcgggagagagacgcaaaagtgtgaagccaaaccctgtccgattgatggagcctgg
ggcccgtggtctccttgggcaatctgctccgccacctgtgggggaggaacaaggacacga
acacgcgtgtgtaacagccctcgtccgcagtatggtggcaagaaatgcccaggagagtcc
aaggacactgattcctgcaataaacaggactgccctgtggatggttgtctatctaaccca
tgcttcgggggtgttgaatgcaccagctcccctgacggctcgtgggagtgcgggccctgc
cctgtcggtttccgtggcaatggaacattctgtgaggatgtgaatgagtgtgacatggtc
cctgatctgtgcttcaaagtcagtgaatcccagcgctgcgttaacacagacccaggattc
cactgtttgccttgtcctcctcgatacaaaggcaatcagccctttggaatgggagtggag
gctgccaagctaaataaacaggtatgtgagcaagaaaacccctgcaaggataaaacccac
aactgccacagatccgctgagtgtatctaccttggccacttcagtgacccaatgtttaaa
tgcgagtgtaaaatcggctatgctggggacggtctcatttgcggcgaggactctgatctt
gatggctggcccaatcagaacctggtgtgtggagccaaccaatcctatcactgcaaaaag
gacaattgtcccaaccttccaaactccggccaagaagactttgataaagacggtcaagga
gacgcctgtgacaaagacgatgataatgatggaatcatggatgagggagacaactgtcct
ctgctgtataatcccaggcaatttgactatgataaagatcttgtcggtgatcgctgcgat
aactgcccatatgagcacaaccccgctcagatcgacacagatggaaatggcgagggagat
gcctgctccgcagacatcgatggagacgaggttttgaatgagcatgataactgcccctac
gtgtacaacaatgaccagaaggacacagatatggatggcgtgggtgaccagtgtgataac
tgccctctgctgcacaaccctgaccagtctgactcagataatgaccgagttggtgacgag
tgcgacaacaatcaggacattgatgaggacggccaccagaacagcctggataattgtccc
tacattcccaatgccaaccaggctgaccatgacaaagatgggaaaggagatgcttgtgat
tttgacgatgatgatgacggaatccctgatgacaaggacaactgcagactggtgcccaac
aaagatcaactagactctgatggggatggaagaggtgatgcttgcaaagatgattttgac
aatgacaacattccagacattttggatgtgtgccctgagaacaatgccatcagtatcact
gacttccggaagtttcagatggtgcatttggaccccaaaggaacaacacaaattgatccc
aactgggtggtcagacatcagggcaaagagttggttcagaccgccaattctgaccctggt
attgctgtgggtttcgatgagttcaactctgtggatttcagtggcactttctatgtcaac
actgacagagatgacgattatgctgggtttgtgtttggctatcagtccagcgggcgattc
tacgtggtaatgtggaagcagataactcagacgtactgggaagacaaaccttcaaaagca
tttggcatctcaggggtttctctgaaagtggtcaactctaccacgggcacaggggagcat
ctgcgtaacgccctgtggcacactggggacactcctggacaggtccgcacactgtggcac
gaccctaaaaatatcggctggaaggattatactgcctacaggtggcatctcatccacaga
cccaagacaggattcatcagagtggtggtttatgaggggaagcagatcatggcagattca
gggccaatttatgataaatcatttgcaggagggagattaggattgttcgtgttctcccag
gaactggtttacttctctgatctcaagtacgagtgtcgagataactga
DBGET
integrated database retrieval system
