Ctenopharyngodon idella (grass carp): 127525290
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Entry
127525290 CDS
T08802
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04137
Mitophagy - animal
cide04140
Autophagy - animal
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127525290
04137 Mitophagy - animal
127525290
04148 Efferocytosis
127525290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127525290
Transcription factors [BR:
cide03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127525290
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
127525290
NCBI-ProteinID:
XP_051773685
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Position
13:13364348..13379585
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AA seq
727 aa
AA seq
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MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYELARELPLPHSTTSNLDKASVMRL
ALSYLRLRKLLNTDVLDVETEFDSQWNSSYLKALDGFLMVLSADGDIVYLSENVSKCLGL
PQIDLTGHSVFEFTHPCDHEELREMLAHRNGLSKKAKDLHTNRSFLLRMKCTLTSRGRTV
NVKSASWKVLRCSGHIHTADGVVKGVCEEKNACSTYLVLICESIPHPANIEAPLDSRTFL
SRHTLDMRFTYCDERITELLGFDPVDLLQHSVYEYYHALDSDHMTKTHHNLFVKGQVCTG
QYRLLAKAGGFVWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNCTKIK
REQEEHQEESLGAEVTMAELKKEGKQRDEKEEESVGEELNDRLKGEPEALTVVDPVLTLD
ITSTDSAISVLTDIPLYNDVMLPSSSVLLPLSPLSPPCSSLNDDDASTAHLQPDDFPFPQ
SSASDSSRSQVDLPVDSELSDQLKPDHVERLFSMDMESKTHFNTQGVGLDLEMLAPYIPM
DDDFQLRTVSPAESMCSSPGSALELTPASSTQTAPALPAAPPVLVSSDTVQQNTRATEQD
NSREIIQDSDISSKCQTNPKLLKRKLETIPLSEAIRLGSVLQVVTDFPQKKIRKSDASSS
EGIRHATILLLPSDVASRLLSRSSEGGAITMPLPQLTRYDCEVNAPVTGRQHLLQGEELL
CALDLVI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctggaaaaaaaagggtgagttcagagcgaaggaaggagaaatcc
cgagatgcagcacgttgtcggagaggaaaagaatcagaggtgttttatgaactggccaga
gaactgccccttccccacagcaccacctctaacctggataaagcatcagttatgagactc
gcactcagttacctgcgtctgcgtaaactactgaacacagatgtacttgatgtggagact
gaatttgactctcagtggaatagttcatatctgaaagctctggatgggtttctcatggtt
ctttctgctgatggtgacatcgtctacctgtcagagaatgtcagcaagtgtctaggtcta
cctcagattgaccttactggacacagtgtgtttgagtttactcatccatgtgatcacgag
gagctcagagaaatgctggcacacaggaatggtctgtccaagaaagcaaaggacttgcac
acaaacagaagttttctattgaggatgaaatgtacactgaccagtagagggcgcactgtc
aatgtcaaatctgcctcctggaaggtgctgcgctgttcgggccatatccacacagcagat
ggtgttgtgaagggtgtgtgtgaggaaaaaaatgcgtgttcaacgtacctggtgcttatc
tgtgagtctattcctcacccggcaaacattgaggctcctctggattctagaacgttcctc
agccgccacactttagatatgcgcttcacctactgtgatgagaggatcacagagctgttg
ggttttgatccagtggatctgttgcagcattctgtgtatgaatactatcacgcgctggat
tctgaccacatgaccaaaacacaccacaacctgtttgtaaagggacaagtgtgtaccgga
cagtaccgactgctggctaaagcaggaggatttgtttgggcagagactcaggccactgtg
atctataacagtaaaaactcccagccacagtgtgtggtctgcgtcaactacatcctcagt
ggaatagaacagcccaaacaaatcctgtcccttcagcaaaccaactgcacaaaaataaaa
cgggaacaggaggaacaccaggaggagtcccttggggctgaagtgaccatggctgagttg
aaaaaggagggaaaacagagggatgaaaaagaagaggagtcagtgggtgaggagctaaat
gacaggctgaagggggagccagaggcactgactgtagtagaccctgtcctcacgctggat
atcaccagcacagactcagcgatctctgtgctgacagatattcccctctacaacgatgtc
atgttgccctcttcaagtgtactgctacccctctcacccctctctcctccctgctcctcc
ctaaatgatgatgatgcctccacagcccatctacaacctgacgacttccctttcccacaa
tcttctgcttctgattcttccagatcccaggttgatctccctgtggattcagaattaagt
gaccagctaaaaccggatcacgtggaaagactattttccatggatatggagtccaagaca
cactttaatacacagggagtgggtttggatctggagatgttagctccatacattcccatg
gatgatgatttccagctgcggactgtttctccagctgagtcgatgtgttccagcccgggt
tcagcgcttgaactgacccccgccagcagcacgcaaactgcccctgctctcccagcagcc
cctccagtcttggtgtccagtgacaccgttcagcagaacactagagccacagagcaggac
aacagcagagaaattattcaagacagtgatatttcttctaaatgtcagaccaacccgaaa
ctactcaagaggaaacttgagaccatacctctgtctgaagcaataaggctggggtctgtg
ttgcaggtggtgactgattttccccagaaaaagatcagaaaatcagatgcttcatcatca
gaaggaattcgtcacgccacgatactgttgctgccatctgatgttgcgagtagattgttg
agcagatcgtcagagggtggagccataactatgcccctcccccagcttacccgttacgac
tgtgaggtaaatgcgcctgtgactggacggcagcacctgttacagggggaggagctactg
tgtgccttggacctagttatttaa
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