Ctenopharyngodon idella (grass carp): 127525733
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Entry
127525733 CDS
T08802
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127525733
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cide01009
]
127525733
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cide04515
]
127525733
Protein phosphatases and associated proteins [BR:
cide01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127525733
Cell adhesion molecules [BR:
cide04515
]
Cadherins
Protocadherins
127525733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF7171
Glycophorin_A
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
127525733
NCBI-ProteinID:
XP_051774479
LinkDB
All DBs
Position
14:11059420..11332228
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AA seq
1225 aa
AA seq
DB search
MTVRVNRNFTVNRPTMCQSANAMWSRWSAMLVWILLLLCCSANVVNTIIYQVTEEQPPNT
LIGSLAADQGLPDTGHLYKLEVGAPYLRVDGKTGDIYTTETPIDRETLKDCRNLFEGDPC
FLEFEVSITDLMKGTGPRLIEGRIEILDENDNTPQFSSPVLTLSIPENTHVGVLFAIPVA
TDKDSGSNGIADYALTTGPEAANLFSLQVAQDSDEKLPQLIVLGNLDREQRDSYDLNIKV
VDGGSPPRQSSALLRITITDANDNVPRFEKTHYEGELPENSPVGHSVLQVKANDSDMGPN
GEVTYSLHQAPPAVQRLLSIDRNTGTIFVKGLVDREEISMLKFYVQAKDNGPQSKSSKSL
VTITVKDQNDNAPLIRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGENAVVTC
VVAGDVPFQLRSASETGNDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSL
RVQVTDMNDNSPVFSPSMYQVDFPEENQPGDKVLDVLATDADSGTNAELTYSITGGSVPE
GLFEINPNTGEVRVMSQLDREQLDHYQFLVAAADKGVPSLRGTATVVVKVLDRNDNDPKF
MLNGYSFSVQENMPPLSPVGMVTVTDYDEGDNAHVQIFVEPDNGKFMIQNGTYTILSTIS
FDREKESTYSFRLKAVDGGDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLDPRTSP
ETHVERVEAEDIDIGSNSELDFSIVGGNPHGLFRISSEGEITLAKEFTSKHIGLHRLVVK
VKDRGTPVRHTTALVHIYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSHDQHSNIL
FGVLGGLFVVILIIVVAVIIRRVLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKSK
VPKPANPSEEDEGGSLQKGLKFNLMDDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPS
IQLQPQSPSASKKHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANSSKYSTKQLPHR
RVTFSTANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGS
IGEMEHPENDLRPLPDVAMTGKCTRECTEYGHSDSCWMPGQPSPNRTKSAKSGPKLSTFV
PYQEREGQERLMADSSSKPHGEERSGGGSNKVASIRFLPPYTSAYSTGGDSGKDCPREEI
PLSQTADYVPATTPSSQGSKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttcgagtgaaccgaaacttcaccgtcaacagaccgacgatgtgccagagtgcc
aatgcgatgtggtcacggtggagtgccatgctagtgtggattttgcttctcctctgttgc
tctgcaaatgtagtcaacaccatcatctaccaggtgaccgaggagcagccgcctaacact
ctaattggcagcttggcagctgaccagggcctgccagacacaggccacctttacaagctt
gaggtgggtgctccttacctccgtgtggatggcaaaacaggggatatctacaccacagag
accccaatcgatcgtgagactctcaaggactgtcgcaaccttttcgagggcgatccttgt
ttcctagaatttgaggtgtctattacagatctgatgaaaggcacaggacctcggctcatc
gaagggcgcatcgagatcttggatgagaacgacaacactccacagttctcttcccctgtc
ttgacattgtcgatccctgagaacacgcacgtgggtgtgctattcgcaattcctgtggcc
accgacaaggattctggaagcaatggcatagcagattatgcgctaacgaccggccctgaa
gctgccaaccttttcagcctgcaggtagcgcaagactcagatgagaaactgccacaactc
attgtattgggtaacctggatagagagcagcgagattcatatgacctcaacataaaagtg
gttgacggcggctctccacctcgccagagtagtgccctgctcaggatcaccattacagat
gccaatgacaatgtacccagattcgagaagacacattatgagggtgagctgccagaaaac
agcccagtgggtcactcagttctacaagtgaaggccaatgactctgacatggggcccaat
ggagaggtgacctacagcctccaccaggcaccaccagcagtccaaaggcttcttagtatt
gaccgcaacacaggcaccatttttgttaaagggctggtggatcgtgaagaaatcagcatg
ctcaagttctacgtccaagctaaagacaatggtccccaatcaaaaagctccaaatccctt
gtgactatcacagtaaaggaccaaaatgacaatgcacccttgatcaggatccggggcatt
ggtcttgtgacacatgaagatggtgttgctaacatatcggaggacatgcctgtgggcaca
gctgtggctctggtggaggtatcagatcgtgatgagggcgaaaatgcagttgtgacctgt
gtggttgcaggggatgtcccattccagctgcgttcagctagcgaaactggcaatgaccgc
aagaggaagtacttcctccagacaaccacgctactggactacgagcggatcaaagactac
aggattgaaatcgtggcagtggactctggcaaccctgcactatccagcacaaattccctg
agggtgcaagtgacagacatgaatgacaattccccggtcttctcgccatccatgtaccag
gtagattttcctgaggagaaccagccaggtgacaaggttttggacgtgttagccacggat
gctgacagtgggactaatgcagagctgacatatagtatcactggtggatcagtccctgag
ggactctttgaaattaaccctaacacaggagaagtacgtgtcatgagccagttggaccgt
gaacaattagatcactatcagtttctagtcgcagcagctgataaaggtgtaccaagcttg
agaggaactgccactgttgttgttaaggtgctcgacaggaacgacaatgaccctaaattt
atgctcaatggttacagcttttcggtccaagagaacatgcctccccttagtcctgttgga
atggtaacagtcacagattacgatgagggcgacaatgctcatgttcaaatctttgtagaa
ccagacaatggcaagtttatgattcaaaatggaacgtacaccatcctttcaactatttcc
tttgacagggaaaaggagagtacctacagtttccgactgaaagctgttgatggaggtgac
ccaccacgttcctcctacgttggcattactattaatgttcttgacgagaatgacaatgct
ccttacgtcaccaagccctcaaactcgtcatacaagttcttggatccccgcaccagccca
gaaacccatgtagaacgcgttgaggcagaggacattgatattggttcaaattcggagctg
gattttagtattgtagggggcaaccctcatggcttgttccgcatctcttcagaaggtgag
attacgttggctaaagagttcacatccaaacacattggtctccaccgtctggtagtaaaa
gttaaggacagaggcacaccggtacgtcacacgactgcactggttcacatctatgtcaat
gagaccattggcaatgtctcgcatgtcgaaggacttgttggacacagtctttatacgcca
cttgaaatggacattgcaggagatccagattattctcatgaccagcatagtaacattctc
tttggagtcttgggtggcctttttgtggtcattctaatcattgtggtggcagtgatcatc
aggcgtgtgctgaaagagaataaaagtggctaccaggctggcaagaaggagaccaaagac
ctctatgctcccaaaccggggcctaagagcaacaagaacaagaaggcaaagaaaagcaaa
gttccaaagcctgccaacccatctgaagaggacgaggggggaagtcttcagaaaggccta
aagtttaacctcatggatgatagcgtcaacgatagccctaggattcacctgccgctcaac
tacccccctggcagcccagacctggggcgacactatcggtctaattctcctctgccatcc
attcagctccaacctcagtcaccttctgcctcaaagaaacaccaggcagtgcaggacctg
ccggccaccaacacctttgtaggaaccggggacaacaactcaacaggctcagaccagtat
tcggattacagctacaaggccaactcttcaaaatatagcaccaaacagctaccgcatcgc
cgagtgaccttctccacagccaatcaggcacaagatctgcaggatccctctcagcacagt
tactatgacagcggtctggaagagtcagagacacccagcagtaagagctcttcagggccc
cgtatcgggcccctcgccctacctgaagaccactatgaacgcaccaccccggacggcagc
atcggagagatggaacaccccgaaaacgatctgaggcctctacctgatgtggctatgaca
ggaaaatgcacccgcgagtgtacggaatacggccactcggattcctgctggatgcccgga
cagccctcacccaaccgcaccaagagtgccaagagtgggcccaagctctccaccttcgtg
ccttaccaggagagggagggtcaggagcgtctgatggctgacagcagctctaagcctcac
ggagaagagcggagcggaggcgggagcaacaaagtggccagcattcgctttttgcctccc
tacactagtgcctattctacaggcggtgactccggcaaggactgcccccgggaggagatc
cccctgagtcagacagccgattacgtccctgccactacaccctccagccaaggctccaaa
agagaaatctacctgtga
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