Citrobacter sp. CRE-46: AN232_07480
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Entry
AN232_07480 CDS
T05520
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cie
Citrobacter sp. CRE-46
Pathway
cie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AN232_07480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cie03019
]
AN232_07480
03009 Ribosome biogenesis [BR:
cie03009
]
AN232_07480
Enzymes [BR:
cie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AN232_07480
Messenger RNA biogenesis [BR:
cie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AN232_07480
Ribosome biogenesis [BR:
cie03009
]
Prokaryotic type
rRNA helicases
AN232_07480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWS95077
UniProt:
A0A2Z3X5F5
LinkDB
All DBs
Position
1476215..1478191
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AA seq
658 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAQIQPTAEGEELDMETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERRE
GGRGEGRGFGGERREGGRGDGRRFSGERREGGRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagaccggtagcggcaaaacggcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcaccgacc
cgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgtgccctgcgt
cagggaccacagatcgtcgtcggtacgccgggtcgtctgctggatcacctgaagcgcggt
actctggacctctccaaactgagcggtctggtactggacgaagctgatgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgccaccatgccggaagcgattcgtcgtattacccgccgctttatgaaa
gagccgcaggaagtacgcattcagtccagcgtcactacccgtcctgacatcagccagagc
tactggactgtgtggggcatgcgtaaaaatgaagcgctggtgcgtttcctggaagcagaa
gattttgatgcggcgattatcttcgtccgtaccaaaaatgcgactctggaagtggcagaa
gcgctggaacgtagcggttatagcagcgctgcgctgaacggcgacatgaaccagtctctg
cgtgagcagactctggagcgtctgaaagatggccgtctggatattctgattgcaaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggtcgttaactacgatatcccg
atggactccgaatcttacgttcaccgtatcggccgtaccggtcgtgcgggtcgtgctggc
cgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatcgaacgcacc
atgaaactgactattccagaagtagaactgccgaacgcagagctgctgggcaaacgccgt
ctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctggatcagtac
cgtgctctgctggcgcagattcagcctaccgctgaaggcgaagagctggacatggaaacc
ctggcagccgcactgctgaaaatggctcagggcgaacgtagcctgatcgtaccaccagat
gcaccgatgcgtcctaagcgtgaattccgcgaccgtgacgatcgtggcccgcgtgaccgc
aacgatcgtggcccgcgtggcgaccgtgaagaccgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcaactgtaccgcattgaagtgggtcgtgatgacggtgttgaagtccgccat
atcgttggcgcgattgctaacgaaggtgatatcagcagccgttacatcggtaacatcaag
ctgtttgcttcccactcgaccatcgaactgccgaaaggtatgccgggcgacgtgctgcag
cactttacccgtacccgcatcctgaacaagccgatgaacatgcagctggttggcgatgca
gtaccgcataccggtggtgagcgtcgtggcggtggccgtttcagcggcgagcgtcgtgaa
ggcggtcgcggtgaaggtcgtggttttggcggtgagcgtcgtgaaggcggtcgtggtgat
ggtcgtcgtttcagcggcgaacgtcgtgaaggtggtcgtggcccgcgccgtgacgattct
tctgctccgcgtcgtgatgactcagccggtcgtcgtcgtttcggcggtgacgcataa
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