Citrobacter sp. FDAARGOS_156: AL515_01755
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Entry
AL515_01755 CDS
T04313
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL515_01755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cif03019
]
AL515_01755
03400 DNA repair and recombination proteins [BR:
cif03400
]
AL515_01755
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL515_01755
Messenger RNA biogenesis [BR:
cif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL515_01755
DNA repair and recombination proteins [BR:
cif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL515_01755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMH12655
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All DBs
Position
376935..378764
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLEMGAKQVLQETFGYQQFRPGQEEIIDTVISGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVAL
TATADETTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAGAYHAGLENTVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRELAHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAHHSALQLTEAARPVLRGEVPLQLAVPRIVALKPRAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaaatgggcgctaaacaggttttgcaggaaacc
tttggctaccaacagtttcgcccgggtcaggaagaaatcattgataccgtaatctccggt
cgcgactgcctggtcgttatgccgaccggtggcggtaaatccctgtgctatcagattccc
gcattattgctcaatgggctcaccgttgttgtttctccgctgatttctctgatgaaagat
caggtcgatcaactgctggccaacggcgtggccgcagcatgccttaactccactcaaagt
cgcgagcagcagcttgaggtgatggcaggctgtcgcagcggacagattcgcctgttgtac
attgcgcctgagcgcctgatgctggataacttccttgagcatctggcgcactggaatccg
gtgctgctggcggtagatgaagcgcactgtatttcgcaatggggacatgatttccgcccg
gaatacgcggcgctgggccagttacgtcagcgtttcccaaccctgccgtttgtggcgctg
accgcgaccgcggatgaaaccacccggctggatattgtgcgtctgctgggactcaacgac
ccgttaattcagatcagcagctttgaccgcccgaacattcgctacatgttgatggagaag
tttaagccgctcgatcagctgatgcgctacgtgcaagagcagcgcggtaagtccggcatt
atctactgtaacagtcgcgctaaagtagaagacaccgccgcgcgtctgcaaagccggggc
atcagtgccggggcttatcatgccgggctggaaaataccgtacgcgctgacgtgcaggag
aaatttcagcgcgacgacctgcaaatcgtggtggcgaccgtggcgttcggtatggggatc
aacaaacccaacgtacgcttcgtggtgcattttgatattccgcgcaacatcgagtcctat
taccaggaaaccggccgcgccgggcgtgacggcctgcctgcggaagcaatgctgttttac
gatccggctgatatggcatggctacgccgttgtctcgaagaaaagcccgccggacaactg
ctggatatcgagcgccataagctcaatgcgatgggggcgtttgccgaggcgcaaacctgt
cgtcgcctggtgctgctgaattattttggcgaagggcgtcaggagccgtgcggtaactgc
gatatctgtcttgacccgccaaaacagtacgacggactcatggatgcgcgcaaagcgctg
tcgacgatttaccgtgtgaatcaacgctttggtatgggttatgtcgttgaggttctgcgt
ggcgcgaataaccagcgtattcgcgagctggcccatgacaagctgccggtctacggcatt
ggtcgtgagcaaagccatgaacactgggtgagcgttattcgccagcttattcatcttgga
ctggtgacgcagaatattgctcatcactccgcgttacagttaaccgaagccgcgcgtccg
gtgctgcgcggtgaagttccactacagcttgcggtgccgcgtattgtggcgctgaaaccg
cgcgcgatgcagaaatccttcggcggtaattacgatcgcaaactgttcgccaaattgcgt
aagctgcgtaaagccattgccgatgaagagaacatcccaccgtacgtggtgttcaacgac
gccacgctgattgaaatggcggagcagatgccagtttcagcgagcgaaatgctgagcgtc
aacggtgtggggatgcgtaaacttgagcgtttcggtaaagagtttatggcgcttattcgc
gcacacgttgatggtgacgacgaagagtag
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