Citrobacter sp. FDAARGOS_156: AL515_02570
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Entry
AL515_02570 CDS
T04313
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL515_02570 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cif03021
]
AL515_02570 (rpoB)
03400 DNA repair and recombination proteins [BR:
cif03400
]
AL515_02570 (rpoB)
Enzymes [BR:
cif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL515_02570 (rpoB)
Transcription machinery [BR:
cif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL515_02570 (rpoB)
DNA repair and recombination proteins [BR:
cif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL515_02570 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AMH12796
LinkDB
All DBs
Position
547127..551155
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtactggacataccttatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagcagctttccgttccgttttcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgactgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtcctggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgtaaactgcctgcgaccattatcctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaagttgttttcgaaattcgtgacaacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcctcctttgacatcgaagctaacggcaaa
gtgtacgtcgaaaaaggccgtcgcatcactgcgcgccacattcgccaactggaaaaagac
gatatcaaacatatcgaagttccggttgaatacattgctggtaaagttgcggctaaagac
tacgttgacgaatctactggcgagctgatctgcgcagctaacatggagctgagcctggat
ctgctggctaagctgagccagtctggccacaaacgtatcgaaacgctgttcactaacgat
ctggaccacggtccgtacatttctgaaactgtacgcgtcgacccaactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgtgaagct
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctatgacctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttctgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgcactcggcccaggcggtctgacccgt
gagcgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtatgcacag
actaacgaatacggtttccttgagacgccgtaccgtaaagtgaccgacggtgttgtaact
gacgaaatccactacctgtctgctattgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaagggcactttgtagaagatctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgtgatcaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccaactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgctgttgctaaacgt
ggcggtactgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggcgagccggttgaacgtggt
gatgtgctggcagacggtccgtccaccgacctcggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggccagaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgcggaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgtg
ccaaacggtgtttccggtacgattatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagctggcctgttcagccgtatctacgctgtgctggtt
tccggtggtgttgaagctgagaagctcgacaaactgccgcgcgaccgctggttagaactc
ggcctgaccgacgaagaaaaacagaatcagctggaacaactggctgagcagtacgacgaa
ctgaaacacgaattcgagaaaaaactcgaagcgaaacgccgtaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggcggttaaacgtcggatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcaaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcttacgatctgggttcagatgttcgtcagaaagttgac
ctgaataccttcagtgatgaagaagttctgcgtctggctgaaaacctgaaaaaaggtatg
ccgatcgcaacgccggtattcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcacactgttcgacggtcgtaccggtgagcag
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgcttgaagca
tacggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtactaagatgtataaaaacatcgtggacggcaaccatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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