Citrobacter sp. FDAARGOS_156: AL515_08595
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Entry
AL515_08595 CDS
T04313
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL515_08595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cif03019
]
AL515_08595
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL515_08595
Messenger RNA biogenesis [BR:
cif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL515_08595
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AMH13905
LinkDB
All DBs
Position
1853067..1854413
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AA seq
448 aa
AA seq
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MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIATPGYEPDPSIKAEPIQNGRQQRGGGGGRGQGGAGRGQQPRRQDGGAPK
AKPRNGEGKPAGDKPRPPRRPRKPSSAQ
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggtttaaaccctgaaattttacgtgccgttgccgaacagggt
taccgtgaacctacccctattcagcaacaggcgatccctgccgtgctggaaggccgcgat
ctgatggccagcgcccagaccggtacggggaaaacggcaggttttaccctgccgctgttg
cagcacctgattacccatcagccgcatggtaaaagccgtcgcccggtgcgtgcgctgatc
ctcacgccaacccgcgaactggctgctcaaattggcgaaaacgtacgtgattacagtaag
tatctgaacatccgctcgctagtggtcttcggcggcgtcagtattaacccgcagatgatg
aagctgcgcggcggcgtagatgtgctgattgccacgcctggtcgtttgctcgatctggaa
caccagaatgcggtgaaactggatcaggttgagatcctggtactcgatgaagctgaccgc
atgctggatatgggctttattcacgacattcgtcgtgttctggcgaagctgccggcaaaa
cgccagaacctgctgttctcagcaacgttctctgacgatattaagtcgctggccgaaaag
ctgctgcacaatccgctggaaatcgaagtggcgcgccgtaataccgcctcagagcaggtg
actcagcacgttcatttcgtggataaaaaacgtaaacgtgagctgttgtcgcagatgatt
ggtcagggcaactggcagcaggtgctggtgtttacccgtaccaaacacggtgcgaatcat
ctggctgaacagctgaataaagacggtatccgcagcgcggcaatccacggtaacaaatct
cagggagcgcgtacccgtgcgctggccgattttaaatccggtgatatacgcgtgctggta
gcgaccgatattgccgcgcgcgggctggacattgaagagttaccgcacgtggtgaactac
gagctgccaaacgtcccggaagattacgtgcaccgtattggccgtaccgggcgtgccgcc
gctaccggcgaagcgttgtcgctggtgtgcgtcgatgaacacaagttgttgcgtgacatc
gagaagctgctgaaaaaagagatcccgcgtattgcgacgcctggctacgagccagatccg
tccattaaagctgagccgatccagaacggtcgccagcagcgtggcggcggtggtggtcgc
gggcagggcggagcagggcgtggtcagcagccgcgtcgtcaggatggcggtgcgccaaaa
gcgaagccgcgtaatggcgaaggcaaaccggcaggcgataagcctcgtccgccgcgccgt
ccgcgcaaaccatcttccgcacagtaa
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