Citrobacter sp. FDAARGOS_156: AL515_10295
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Entry
AL515_10295 CDS
T04313
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL515_10295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cif03400
]
AL515_10295
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL515_10295
DNA repair and recombination proteins [BR:
cif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL515_10295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMH14224
LinkDB
All DBs
Position
complement(2230536..2233982)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPAKAGDQRQLGELTDAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPANTLLVNTGDIETSAERFQADTL
SRFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLANKAANTNLGFQKLPD
IAVQAQQKSPLDALRKFLESFTGPVIFSVESEGRREALGELLARIKVAPKRILRLDEAAD
NGRYLMIGAAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIGI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKEGREPSLEDLTNQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLAERKTRIDWVRQFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgcttccagcaaaagctggcgatcagcgccagttgggt
gaacttaccgatgccgcctgcgcgacgctggtcgccgaaatcgctgaacatcacgcgggg
ccagtggtgctgatcgcgccggacatgcaaaatgcactgcgtttgcatgatgaaattcgt
cagtttaccgaccagatggtgatgaatctggctgactgggaaacactgccctatgacagt
ttttccccacatcaggaaattatctcctcgcgactatccacgttgtatcaactgcctgcg
atgcaacgcggtgtgctgatcgtaccggtcaacacgttgatgcagcgcgtctgcccgcac
agctatctacacggtcatgcactggtgatgaaaaagggtcagcgcctgtcgcgtgatgcc
ctgcgtgagcagctggacagcgccggctatcgccatgttgatcaggtcatggaacacggc
gaatacgccacgcgcggcgcgttgttggatctgttcccgatgggcagcgagctgccttat
cgccttgatttctttgatgacgaaatcgacagcctgcgtctgtttgataccgacacccag
cgcacgctggaagaagtcgatgccattaatttgcttcccgcgcacgaattcccgactgac
aaaacggccatcgagctgttccgcagtcagtggcgcgacacctttgaggtgaaacgcgac
gccgaacatatttatcagcaggtcagcaaaggcacgttacctgcgggtattgaatactgg
cagccgctatttttcaacgagccgttgccgccgttgttcagctacttcccggccaatacg
ctgctggtgaataccggcgatatcgagaccagcgctgagcgcttccaggccgataccctg
tcacgttttgagaatcgcggcgttgatccgatgcgcccgcttctgccacctgaatcactg
tggctgcgggtggatgagctgttttctgaactgaaacgctggccgcgcgttcagctaaaa
accgagagtctggcgaacaaagctgcgaatactaacctcgggttccagaagctgccggat
atcgccgtgcaggcgcagcaaaaatcaccgttagatgcgttacgtaaattccttgagagc
tttaccggtccggtaattttctcagtggaaagtgaaggtcgccgggaagcgcttggcgaa
cttctggctcgcatcaaagttgcgccgaagcggatattgcgtcttgatgaagccgcagac
aatggtcgttatttgatgattggtgcagccgagcatggcttcatcgatagcaaacgcaat
ctggcgctgatttgtgaaagcgatctgctgggtgaacgcgtggcgcgccgccgccaggat
tctcgtcgtaccatcaacccggatacgttaattcgtaaccttgcagagctgcatccaggt
cagccggtggtgcatctggagcacggcgtgggtcgctatgccggtatgaccacgctggaa
gcgggcggcattaccggcgaatacctgatgctcacctacgccaacgacgccaaattgtat
gtaccggtgtcatcgttgcatttgataagccgctatgccggaggcgcggaagagaatgcc
ccgctgcataaacttggcggagatgcctggtcgcgcgcccggcagaaagccgccgagaag
gtacgtgacgtcgcggcggagttgctggatatttacgcccagcgtgcggcaaaagaaggt
tttgcctttaaacacgaccgcgagcagtatcagctgttttgtgacagcttcccatttgaa
accacacccgatcaggcgcaggccatcaacgcggtactcagcgatatgtgtcagccgctg
gccatggaccgcctggtgtgtggcgatgtcggcttcggtaaaaccgaagtggcgatgcgc
gccgccttcctcgccgtagagaatcacaagcaggttgccgtgctggtgccgaccaccctg
ctcgcccagcagcacttcgacaacttccgcgatcgttttgccaactggcccgtgcgcatt
gagatgctgtcccgttttcgtagcgccaaagagcaagcgcagattctggagcaggttgcc
gaaggtaaaatcgatattctcatcggcacgcacaaactgctgcaaagcgatgtgaaactc
aaagatttgggtctgctgattgtcgatgaagagcaccgcttcggtgtccgtcacaaagag
cgtattaaagcaatgcgcgccgatgtcgatattctgacgctgaccgcaaccccgatcccg
cgtacgctcaatatggcgatgagcggcatgcgcgatctgtcgatcatcgccacaccgccc
gctcgtcgtctggcggtcaaaaccttcgtgcgcgaatacgacagcctggtggtacgcgaa
gctatcctgcgtgaagtgctgcgcggcgggcaggtctactatctgttcaacgatgttgaa
aacatccagaaaaccgctgacaggctggcagagctggtaccggaagcgcgaatcgggatt
ggacacggacaaatgcgcgaacgcgagctggaacgcgtgatgaacgatttccaccatcag
cgcttcaacgtgctggtgtgtaccaccatcatcgaaaccgggatcgacattccaaccgct
aacaccattattatcgagcgcgctgaccatttcgggttggcacaattgcaccagctacgc
ggccgcgtgggacgttcacaccatcaggcctatgcctggctgttgacgccgcatccaaaa
gcgatgaccaccgatgcacaaaaacgccttgaggcaattgcatcactggaagatttgggt
gcaggttttgcgctagccactcacgacctcgaaattcgcggcgcgggggaactgctgggc
gaagatcagagcggttcgatggaaaccatcggcttctcactatacatggaactgctggag
aacgcggttgacgcgctaaaagagggacgcgaaccgtcactcgaagatctcaccaaccag
caaactgaagtcgagttgcggatgccgtcactattgccagatgactacatccccgatgtg
aatacgcgactgtcgttctacaagcgcattgccagtgcgaaaggcgaaaacgagctggaa
gaaattaaggtcgagctgatagaccgttttggtttgttgcctgacccggcccgtacgttg
ctggatattgcccgtttgcgccagcaagcgcaaaaacttggtatcagaaagctagaaggc
aatgaaaaaggcgggacgattgagtttgccgagaagaaccacgtcaacccggtgtggctg
attggcttactgcaaaagcaaccgcaacacttccgtctggatggcccaaccaggctgaag
ttcatgcaagatttagctgagcgtaaaacccgtatcgactgggtacgtcagtttatgcgt
caactggaagaaaacgccatagcatag
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