Citrobacter sp. FDAARGOS_156: AL515_12690
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Entry
AL515_12690 CDS
T04313
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cif03019
]
AL515_12690
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AL515_12690
Messenger RNA biogenesis [BR:
cif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AL515_12690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
AAA_16
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AMH14663
LinkDB
All DBs
Position
complement(2730592..2734494)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFNMLQQQLDSLMLRDRQRFARRLHGVKKVKNPDAQQAIYQEMAKEIAQAAGK
VVLREAARPEITYPENLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPVLSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVVSARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQIEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDRDDW
HWDQVPDHLKITFRVVDDKNKKLQEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDRLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQITG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttcaacatgctgcagcaacagctggactcactgatg
ctgcgcgacagacagcgttttgcccgccgcctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagatcgcgcaggcagcaggtaaa
gtcgtgctgcgcgaagcggcgcgtccggagattacctatccggaaaacctgcccgtcagc
cagaaaaaacaggatattctggacgcaattcgcgatcatcaggtggtgattgttgctggc
gagaccggctcggggaaaaccacccagttacccaaaatctgtatggaactggggcgcggg
gtaaaagggctgatcggccatacccagccgcgtcgtctggcggcgcgcaccgtggcgaac
cgtattgcggaagagctgcagaccgagccgggcggctgtattggttataaagtgcgtttc
agcgatcatgtcagtgataacactatggtcaagctgatgacggacggtatcctgctggcg
gaaatccaacaggatcggctgctaatgcagtacgacaccatcatcatcgatgaagcgcat
gaacgcagtctgaatatcgactttctgctcggctatctgaaagaacttctgccgcgtcgc
ccggatctaaaaattatcatcacttcggcgaccatcgacccggagcgtttttcaaagcat
ttcaataacgcgccgattatcgaagtctccggtcgaacgtacccggtggaagtgcgttat
cgcccgattgttgaagatgcagatgacaccgagcgtgaccaactgcaggcaatttttgat
gccgtagatgagttaggccgtgaaagtcagggcgatattctgatcttcatgagcggcgag
cgcgaaattcgcgatactgcggatgcgctgaataagctggatttgcgccataccgaagtg
ctaccgctctatgcgcgtctttcaaacagtgagcagaaccgcgtattccagtcgcacagc
ggccgccgtatcgtgctggctaccaacgtggcggaaacctcgctaaccgtgccggggatc
aaatatgtaattgacccgggcactgcgcgtatcagccgttacagctaccgtactaaagtc
cagcgtttaccgattgaaccggtgtcgcaggcttctgcgaaccagcgtaaaggccgctgc
ggtcgtgtttcggaagggatctgtattcgcctgtattccgaagacgatttcctgtcgcgt
ccggagtttaccgacccggagatcctgcgtaccaacctggcatccgttattttgcagatg
actgcgctgggactgggggatatcgcggcattcccgttcgttgaagcaccggataaacgc
aatattcaggacggggtacgcctgctcgaagagctgggggcgataaccaccgacgaacag
gcaaccgcttacaagttaacgccgttgggccgtcagctgtcgcaactgccggtggatccg
cgtctggcgcgcatggtgctggaagcgcaaaaacatggctgcgtacgtgaagcgatgatc
attacctcggcgctgtccattcaggacccgcgcgagcgtccaatggacaagcaacaggct
tctgacgagaaacaccgccgcttccacgacaaagagtctgatttcctcgcgtttgtgaac
ctgtggaactatcttggcgagcagcaaaaagcgctgtcgtcaaaccagttccgtcgccag
tgcaaacttgattttctaaactacctgcgcgtgcgagagtggcaggatatctacacgcaa
ctgcgccaggtagtgaaagagttgggtattccggttaacagcgaacctgctgagtatcgg
gaaattcacgttgcgctgttgaccgggttactctcgcatatcgggatgaaagatgccgat
aaacaggaatttaccggcgcgcgtaacgcccgcttctcgatcttccccggctctgggttg
tttaaaaaaccaccgaaatggacgatggtggcggagttggtggaaaccagccgcctgtgg
ggacgtattgccgcacgtatcgatcccgagtgggtggagccggttgcccagcatctgatc
aaacgttcatacagtgaaccgcactgggaacgcgcgcagggtgctgtaatggcgacagaa
aaggtcaccgtttacggcttaccgattgtggccgcccgtaaggtgaactacagccagatc
gatccagtcctgtcgcgtgaactgttcatccgccatgcgttggtggaaggcgactggcaa
actcgccatgcgtttttccgtgacaacctcaagctgcgtgcggaagtggaagagttagag
cacaaatcacgccgtcgcgacattctggtcgatgatgagacgctgtttgagttttacgac
cagcgcatcagccatgatgtggtttctgcccgccactttgacagctggtggaagaaggtt
agccgcgagacaccggatctgctcaactttgaaaagagcatgctcatcaaagagggcgcg
gagaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaaactgcgc
ctgagctatcagtttgaacccggcgctgatgcggatggtgtgaccgtgcatattccgctg
ccgctgcttaaccagatcgaagagagcggttttgaatggcaaattccggggctgcgccgt
gaactggtgatcgccctgattaaatcactgccaaaaccggtacgacgtaactttgtgccg
gcaccgaactatgcggaagcatttttaggtcgtgtgactccgctggaactgccgctgctg
gattcactggagcgtgaactgcgccggatgaccggcgtcaccgttgaccgtgacgactgg
cactgggatcaggtgcccgatcatctgaaaataacgttccgggtggtcgacgataagaac
aaaaagctgcaggaagggcgttcgctgcaggatttgaaagatgcgctgaagggcaaagtt
caggaaacgctgtctgcggtggcggatgacggtattgaacagagcggattgcacatctgg
agcttcggtcaactaccggaaagttacgagcaaaaacgcggcaactataaagtcaaagcg
tggcctgcgctggtggatgagcgtgacagcgttgccatcaaactgtttgataatccgctg
gagcaacagcaggcgatgtggtgcggtttacgccgcctgttgttgctgaatattccatca
cctatcaaatatttacacgagaaactgcctaataaagcgaagctggggctgtattttaac
ccgtatggcaaagtgctggatttgattgacgactgtatctcctgcggtgtggatagactt
atcgacgctaacggcggcccggtgtggacggaagagggctttgcggcgttgcacgaaaaa
gtgcgggctgagctgaatgacacagtggtcgatattgcgaagcaggtcgaacagatcctg
acagcggtatttaatatcaacaaacgtctgaaagggcgtgtggatatgaccatggcgctg
gggctttcggatatcaaagcgcaaatgagcgggctggtgtaccgtggatttgtcaccggc
aatggattcaaacgcctgggcgatacgttgcgttatttgcaggccattgaaaaacggctg
gagaaactggcgattgatccacatcgcgatcgggcgcagatgctgaaagtagatagtgtg
cagcaggcctggcagcagtggttcaataaactgccgcccgcgcggcgtgaagatgatgat
gtcaaagagatccgctggatgatagaagagctgcgtgtcagctattttgcccagcagctt
ggcacaccatatccgatctccgataaacgtattctgcaggcgatggagcagattacgggg
tga
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