Citrobacter sp. FDAARGOS_156: AL515_13135
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Entry
AL515_13135 CDS
T04313
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cif03032
]
AL515_13135 (topA)
03400 DNA repair and recombination proteins [BR:
cif03400
]
AL515_13135 (topA)
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL515_13135 (topA)
DNA replication proteins [BR:
cif03032
]
Prokaryotic type
DNA Topoisomerases
AL515_13135 (topA)
DNA repair and recombination proteins [BR:
cif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL515_13135 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
CK_II_beta
LRV_FeS
DUF4795
Motif
Other DBs
NCBI-ProteinID:
AMH14746
LinkDB
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Position
complement(2823082..2825679)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMVRDYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVEKGDTLTLIELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgactagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgcatgggcgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcctggtaaagagaaagttgtctctgaactgaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagttatcggtggcgacgacacccgctacagccgcgtggtgtttaac
gaaattactaaaaatgctattcgtcaggcgtttgaaaaaccgggcgagttgaacatcgat
cgtgttaatgcgcaacaggctcgccgctttatggaccgtgttgtgggctatatggtgtcg
ccgctgctgtggaaaaaaattgcccgtggcctgtctgctggccgcgtacagtctgtggct
gtgcgtctggtggttgagcgtgaacgcgaaatcaaggcatttgtacccgaagagttctgg
gaaattgatgccaataccacgacgccaggcggcgacgcgttaccgctcgaagtgacgcat
cagaacgataaaccgttccgtccggttaatcgcgagcaaacactcgcggcagtaagcctg
ctggaaaaagcgcgctacagcgttctggaacgtgaagataagccgaccagcagcaagccg
ggcgcgccgttcatcacctccacgctacagcaggccgccagcacgcgtctgggcttcggt
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggttacatcacttacatg
cgtactgactcaaccaacctgagtcaggatgcggtggcgatggttcgcgattacatcagc
gataattttggcaaaaagtatttgccggagagcgcgaaccagtacgccagcaaagagaac
tcgcaggaagcgcacgaagctatccgtccttccgatgtcgccgtacaggcagaatcgctg
aaagatatggaagccgatgcgcaaaaactgtatcagctgatctggcgccagtttgttgcc
tgtcagatgacgccagcgaaatacgactccaccacgctgaccgtgggcgcgggtgatttc
cgtctgaaggcgcgcggtcgtattctgcgcttcgatggctggacgaaagtaatgcctgca
ctgcgtaagggtgatgaagatcgcattttaccggcggtagaaaaaggcgatacgctgacg
cttattgaactgacgccagcacagcactttactaaaccgcctgcgcgctttagtgaagct
tcgttggttaaagagcttgaaaagcgtggcattggtcgtccttccacctatgcgtcgatc
atttctacgattcaggatcgcggttatgttcgcgtggagaaccgtcgtttctacgcagaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaactgatgaactac
gatttcaccgcgcagatggaagacagccttgaccaggtggcgaaccacgaagccgagtgg
aaaggtgtgctcgacaacttcttcagcgattttactcagcaactggataaagccgagaaa
gatcctgaagaaggcggtatgcgtccgaaccagatggtgctgaccagcattgattgtccg
acatgtgggcgcaagatgggtattcgtaccgccagcaccggcgttttccttggttgctcc
ggctacgcactttccccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtattgaacgtgctggaaggcgacgatgcggaaacgaacgctttgcgcgcgaaacgt
cgctgccagaagtgtggtacggcgatggacagctatctcatcgatccaaaacgtaagctg
catgtctgtggtaacaacccgacctgcgatggttacgaaatcgaagagggcgagttccgc
attaagggttatgacggtcctgtcgttgagtgcgagaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggtaaatacatggcatgtactaacgacgagtgtaaaaacacccgt
aagatcctgcgtaacggcgaagtggctccgccgaaagaagatcctgttccgttgccggaa
ctgccgtgtgaaaaatcggacgcgtatttcgtgttgcgtgatggtgcagcaggtattttc
ctggctgcgaacaccttcccgaaatcacgtgaaacccgtgcgccgttagtggaagagttg
tatcgcttccgcgatcgtttgccggaaaaactgcgctatctggccgatgcgccgcagacg
gaccccgatggtaataagtcgatggttcgctttagccgtaaaactaagcagcagtatgtc
gctgcggaaaaagacggtaaagcaaccgggtggtctgcatttttcgttgatggcaaatgg
gtagaagggaagaaataa
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