Citrobacter sp. FDAARGOS_156: AL515_20635
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Entry
AL515_20635 CDS
T04313
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cif
Citrobacter sp. FDAARGOS_156
Pathway
cif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL515_20635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cif03019
]
AL515_20635
03009 Ribosome biogenesis [BR:
cif03009
]
AL515_20635
Enzymes [BR:
cif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL515_20635
Messenger RNA biogenesis [BR:
cif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL515_20635
Ribosome biogenesis [BR:
cif03009
]
Prokaryotic type
rRNA helicases
AL515_20635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMH16124
LinkDB
All DBs
Position
complement(4408986..4410959)
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AA seq
657 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKMQPEEELDIETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDR
GPRNDRGGEDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL
FASHSTIELPKGMPGDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERREG
GRGEGRNFSGERREGGRGDGRRFSGERREGNRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagacaggtagcggcaaaactgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcaccgacc
cgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgtgccctgcgt
cagggaccacagatcgtcgtcggtacgccgggccgtctgctggatcacctgaagcgcggg
actctggacctctctaaactgagcggtctggtactggacgaagcagacgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcgactatgccggaagcgattcgtcgtattacccgccgctttatgaaa
gagccgcaggaagtacgcattcagtccagcgttaccacgcgtcctgacatcagccagagc
tactggactgtatggggcatgcgtaaaaatgaagcgctggtgcgtttcctggaagcagaa
gattttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaagtggcagaa
gcgctggagcgtagcggttatagcagcgctgcactgaacggcgacatgaaccagtccctg
cgtgagcagactctggaacgtctgaaagatggccgcctggatattctgattgcaaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactacgacatcccg
atggattccgagtcttacgttcaccgtatcggccgtactggtcgtgcgggtcgtgctggc
cgtgcgctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatcgaacgcacc
atgaagctgacgattccggaagtagaactgccgaacgcagaactgctgggcaaacgccgt
ctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctggatcagtac
cgtgctctgctggcgaaaatgcagccggaagaagagctggatatcgaaacgctggcagcc
gcactgctgaaaatggctcagggcgaacgtccgctgatcctgccgccagatgcgccgatg
cgtccgaaacgcgaattccgcgaccgtgacgatcgtggtccgcgtgaccgcaacgatcgt
ggcccgcgtaatgaccgtggtggtgaagatcgtccgcgtcgtgaacgtcgtgacgttggc
gatatgcagctgtaccgcattgaagtgggccgtgatgacggtgttgaagttcgtcatatc
gttggcgcgattgctaacgaaggcgatatcagcagccgttacatcggtaacatcaagctg
tttgcttcccactccaccatcgagctgccgaaaggtatgccgggcgacgtgctgcagcac
tttacccgtactcgcatcctgaacaagccgatgaatatgcagctggttggcgatgcagtt
ccgcacaccggtggtgagcgtcgtggcggtggccgtttcagcggcgagcgtcgtgaaggc
ggtcgtggcgaaggtcgtaatttcagcggtgagcgtcgtgaaggcggtcgtggcgatggt
cgtcgtttcagcggcgaacgtcgtgaaggcaaccgtggtccgcgtcgtgacgattcttct
gctccgcgtcgtgatgactccgctggtcgtcgtcgtttcggcggtgacgcataa
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