Citricoccus sp. SGAir0253: E7744_03945
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Entry
E7744_03945 CDS
T05972
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cig
Citricoccus sp. SGAir0253
Pathway
cig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E7744_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cig03021
]
E7744_03945
03400 DNA repair and recombination proteins [BR:
cig03400
]
E7744_03945
Enzymes [BR:
cig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E7744_03945
Transcription machinery [BR:
cig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E7744_03945
DNA repair and recombination proteins [BR:
cig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E7744_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
QCU77460
LinkDB
All DBs
Position
862706..866596
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNDNSSFGLMRIGLATADEIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWE
CYCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLD
LAPKDLEKIIYFAAYMITSVDEEGRHADLPNLQAEHDQETRHLADQRDADIAAVAADLEK
DLAKLEAEGAKAAEKKKARDAADKTMAQIRKRADAELDRMEKIWDRFKNLKVADLEGDEG
LFRAMRDKYGQYFEGSMGAESIKRRLESFDLEAEAEMLRETIKTGKGQRKTRALKRLKVV
NAFLTTDNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLD
LGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERF
RPQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCGAFNADFDGD
QMAVHLPLSPEAQAEARLLMLSSHNILKPSDGRAVAVPAQDMIIGLNHLTTVREDAAGAG
EAYSSVAEAIMAHDAGALHLNAPVKIAVDGFVPSAQTPAPEGWEEGQRAVLDTTLGKVLF
NELLPADYPWLDTQATKGTLGALVNDLAERYPMVQTAATLDNLKDAGFYWGTWSGVTVAI
SDITSEFDKASIMEGYENQALKVQAQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGL
PRLNTINRMVSSGARGNWLQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIAT
HGARKGLADTALKTANSGYLTRRLVDVSQDVIVREEDCGTERGLTEVIAVPNADGELVRH
ETVENSAYARTLAVDVEAEDGTVLGRAGEDIGDVAIDAYIAAGVTEVKVRSVLTCESAVG
TCAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRI
QELFEARTPKGVAPISEVAGRVTIEDAEKQLRLVLTPDDGSEEIAYPVLRRARLLVADGE
HVAVGTQLVAGAVDPKQVLRVLGPRAAQKFLVQEVQDVYQSQGVGIHDKHVEVIVRQMLR
RITVIESGDTDLLPGELTDRARFTAANRKAVAEGRQPASGRDELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKVNVEPTEEAKANLF
TGPAGFADFDYPGLDSSSTPEFHAISLDDYGTDYRG
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgacaactcatccttcggcctcatgcggatcggcctggccaccgccgacgag
atccgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcaccctg
aagccggagaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggag
tgctactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggc
gtcgaggtgacccgctccaaggtgcgccgcgagcggatgggccacatcgagctcgccgcc
ccggtcacccacatctggtacttcaagggcgtcccgtcccggctcggctacctgctggac
ctggcccccaaggacctcgagaagatcatctacttcgccgcctacatgatcacctcggtg
gacgaggagggccgccacgcggacctgccgaacctgcaggccgagcacgaccaggagacc
cgtcacctggccgaccagcgcgacgccgacatcgccgccgtggccgcggacctggagaag
gacctggccaagctcgaggccgagggtgccaaggccgccgagaagaagaaggcccgggac
gccgcggacaagaccatggcgcagatccgcaagcgcgcggacgccgagctggaccggatg
gagaagatctgggaccggttcaagaacctcaaggtcgccgacctcgagggcgacgagggc
ctgttccgcgccatgcgggacaagtacggccagtacttcgagggctccatgggcgccgag
tccatcaagcggcgcctggagtccttcgacctcgaggccgaggccgagatgctgcgcgag
acgatcaagaccggcaagggccagcgcaagacccgcgccctgaagcggctcaaggtcgtc
aacgccttcctgaccacggacaactcgccgctgggcatggtcctggacgccgtcccggtg
atcccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgcgacctccgac
ctcaacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgactgctggac
ctgggcgcgccggagatcatcgtcaacaacgagaagcgtatgctccaggaggccgtggac
tctctgttcgacaacggccgccgcggccgcccggtcaccggtccgggcaaccgcccgctg
aagtcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggc
aagcgcgtggactactcgggccgttcggtcatcgtggtgggcccgcagctgaagctgcac
cagtgcggcctgccgaagcagatggcgctggagctgttcaagcccttcgtgatgaagcgg
ctcgtggacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgcttc
cgcccgcaggtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaac
cgtgcacccaccctgcaccgcctcggcatccaggccttcgagccgcagctcgtggagggc
aaggccctgcagctgcacccgctggtctgcggcgcgttcaacgcggacttcgacggcgac
cagatggccgtgcacctgccgctgagccccgaggcccaggccgaggcgcggctgctgatg
ctctccagccacaacatcctgaagccctcggacggccgtgccgtggccgtcccggcccag
gacatgatcatcggcctgaaccacctcaccacggtgcgggaggacgcggccggtgccggg
gaggcctactcctcggtggcggaggccatcatggcgcacgacgccggcgccctgcacctg
aacgccccggtgaagatcgccgtggacggcttcgtgccgtccgcccagacccccgccccc
gagggctgggaggagggccagcgcgccgtcctggacaccacgctgggcaaggtgctgttc
aacgagctgctcccggccgactacccgtggctggacacccaggccaccaagggcaccctc
ggcgccctggtcaacgacctggccgagcgctacccgatggtgcagaccgccgcgaccctg
gacaacctcaaggacgccggcttctactggggcacgtggtccggcgtgaccgtggcgatc
tccgacatcacctcggagttcgacaaggcctccatcatggagggctacgagaaccaggcg
ctcaaggtccaggcccagtacgacaagggcctgatcgcggacgacgagcgtcgttccgag
ctgatcgacatctggaacaaggccaccgacgaggtcgcggccgccatgaaggacggactg
ccgcggctgaacaccatcaaccgcatggtctcctccggcgcccgaggcaactggctgcag
gtccggcagatcgccggcatccgcggcctggtggccaacccgaagggtgagatcatcccg
cgcccgatcaagtcctcctaccgcgagggcctgtccgtgctcgagtacttcatcgccacc
cacggtgcccgcaagggcctcgcggacaccgcgctgaagaccgcgaactcgggttacctc
acccgtcgactcgtggacgtgtcccaggacgtcatcgtccgcgaggaggactgcggcacc
gagcgcggcctgaccgaggtcatcgccgtgccgaacgccgacggcgagctggtgcgccac
gagaccgtggagaactccgcgtacgcccggaccctggccgtggacgtcgaggccgaggac
ggcaccgtcctgggccgcgccggcgaggacatcggggacgtggcgatcgacgcgtacatc
gccgccggcgtcaccgaggtcaaggtgcgctccgtgctcacctgcgagtccgccgtcggg
acctgcgcgaagtgctacggccgctccatggccaccggccagctggtggacatcggcgag
gccgtgggcatcatcgccgcccagtccatcggcgagccgggcacccagctcaccatgcgg
acgttccacaccggtggcgtggcctcggccgacgacatcacccagggcctgccccgtatc
caggagctcttcgaggcccgcaccccgaagggcgtggccccgatctccgaggtcgccggc
cgggtcacgatcgaggacgcggagaagcagctgcgcctcgtgctgaccccggacgacggc
tccgaggagatcgcctacccggtgctgcgccgtgcgcgcctgctggtggccgacggcgag
cacgtggccgtgggcacccagctcgtggccggtgccgtggacccgaagcaggtgctgcgc
gtgctcgggccccgggcggcgcagaagttcctggtccaggaggtccaggacgtgtaccag
tcccagggcgtgggcatccacgacaagcacgtggaggtcatcgtccggcagatgctgcgc
cggatcaccgtcatcgagtccggcgacacggacctgctgccgggcgagctgaccgaccgg
gcccgcttcaccgccgcgaaccgcaaggccgtggcggagggccgccagccggcctcgggc
cgtgacgagctcatgggcatcaccaaggcctcgctcgccaccgactcgtggctgtccgcc
gcgtccttccaggagaccacccgggtgctgacccaggcggccatggagggcaagtcggac
ccgctgctgggcctgaaggagaacgtgatcatcggcaagctgatcccggccggcaccggc
ctggaccggtacaccaaggtcaacgtcgagcccacggaggaggccaaggccaacctgttc
accggcccggccggcttcgcggacttcgactacccgggcctggactcctcgtccaccccg
gagttccacgcgatcagcctggacgactacggcaccgactaccgcggctga
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