Citricoccus sp. SGAir0253: E7744_09905
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Entry
E7744_09905 CDS
T05972
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cig
Citricoccus sp. SGAir0253
Brite
KEGG Orthology (KO) [BR:
cig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cig03019
]
E7744_09905 (hrpA)
Enzymes [BR:
cig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E7744_09905 (hrpA)
Messenger RNA biogenesis [BR:
cig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E7744_09905 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
AAA_25
FtsK_SpoIIIE
ResIII
NACHT
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QCU78435
UniProt:
A0A4V1HEI9
LinkDB
All DBs
Position
2247964..2252121
Genome browser
AA seq
1385 aa
AA seq
DB search
MSDASAAPAAASSAPAPATAPPASAVPPGDRRPRLEYPPELPVSAERDTIKDAIRGHQVV
IVAGETGSGKTTQLPKMLLELAQDPDEPAVSGTGMIGHTQPRRLAARSVAERIAHEVGTP
IGTDVGYQVRFTAETSADTRIKVMTDGILLAEIQHDRLLSRYAAIIIDEAHERSLNIDVL
LGYLKRILPERPDLRVVITSATIDPESFAAHFAAPPAEEGGEPVPAPVIEVSGRTYPVEV
RYRPLDQPRPLDDPEDDADDAEDARDPVDAVCDAVDELSREAPGDILVFFSGEREIRDTA
EALAPRVAANRRLAGAEVLPLYGRLSMAEQHRVFSPGGRRRIVLATNVAETSLTVPGIKY
VIDTGTARISRYSHRTKVQRLPIERISQASANQRSGRCGRTSDGIAIRLYSEEDYLSRPE
FTDPEILRTNLSAVILQMCSMGVARTPADVGDFPFLQAPDPRQVADGATVLTELGALASG
RPDAAGRTHPKGTITPVGRKLARLPVDPRLGRMIVEAGERGCVREVMVLAAALTIQDPRE
RPTEQRAQADEQHARFADENSDFSALLNLWSYLRTQQKELSGNQFRRLCRAEHINYLRVR
EWQDLVQQLRQLAKPLGISVSPGPVDPVGQHEPVHRSLLAGLLSHIGSWDERKREYAGAR
NTRFAVFPGSALFRKRHPFVMAAELVETSRLWARMVARIDPDWAVEAAGPLAKRTYNEPH
WSRRSGSVVAREKVTLFGVTLVPDRTVQFWRIDPVLSRELFIRHALVEGDWRTRHHFFAR
NRQALAEVEELETRLRRRDLRVSDQDLFEFYDARVPASVVSERHFDAWWKKQRHRTPELL
DFDPAALLAVDAQDLDTDQFPTTFHHPTEGGGVDLELSYDFNPAATAGEPDGITVIIPVL
LLNQMDPERFRWLVPGLRVELVTALIRSLPKAVRKTVVPAPDVARAAVERLAEEADPQRD
DLLPALELVLRRLRGVVIPPGSWDLSAVPAHLVPDYRVVDARGAVIGAGQDLAALQDRLA
GQNRTAIAESLARASGAGSSPAAGRPDGGAPSPAALAGAPGTAGDGGRGGRGRGRGGGRG
AAAGPVLAERHGLTTWDLGDIPRKLDTTVSAGSGTQRITGYPGLVAEALPDGSPAAGLIV
HRTEQDQHAAHRGGVAALLLARLPSPQRYVLDHLDNREKLTFTQNPHGSVDQLVADCTRA
AVDRLLPEELPYTAAGFEALFGTVRAELIDTVFAVTAVVERVLARAAQVRRQLKGSVSLA
MAPALSDIKAQLEQLVFPGFVAATGWRHLQHLPRYLDGMLRRIERLQSGGHVQRDARDMA
VVQSLEDDFDAAVAALPAGRPVPPELEEVRWLLEELRVGLFAQELGTAVSVSEKRVRQAL
RRATD
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgcctccgccgcccccgccgcggcctcctccgcgcccgctcccgccaccgcc
ccgccggcctccgccgtgccgcccggggaccggcgcccgcgcctggagtacccgcccgag
ctgccggtctcggccgagcgggacaccatcaaggacgcgatccgcggccaccaggtcgtc
atcgtggccggggagaccggctcgggcaagaccacccagctgcccaagatgctcctggag
ctggcccaggacccggacgagcccgcggtgtccggcaccgggatgatcggccacacccag
ccgcggcggctcgccgcccgctccgtcgccgagcgcatcgcccacgaggtcgggaccccc
atcggcacggacgtcggctaccaggtccggttcacggccgagacctcggcggacacccgc
atcaaggtgatgacggacggcatcctgctcgcggagatccagcacgaccggctgctctcg
cgctacgcggccatcatcatcgacgaggcccacgagcgcagcctgaacatcgacgtgctg
ttgggctacctcaagcgcatcctgcccgagcggccggacctgcgggtggtgatcacctcc
gcgacgatcgacccggagtccttcgcggcgcacttcgccgccccgccggccgaggagggc
ggggagccggtgccggcccccgtcatcgaggtctccgggcgcacctacccggtggaggtg
cgctaccggccgctggaccagccccgcccgctggacgatcccgaggacgacgcggacgac
gccgaggacgcgcgcgacccggtggacgcggtgtgcgacgccgtcgacgagctctcgcgc
gaggcccccggggacatcctcgtgttcttctccggggagcgggagatccgcgacacggcc
gaggccctggccccgcgcgtggccgcgaaccgccggctggccggtgcggaggtcctgccc
ctgtacggccggctctccatggccgagcagcaccgcgtgttctcccccggcgggcggcgc
cggatcgtgctggccacgaacgtggcggagacgtccctgacggtgccgggcatcaagtac
gtgatcgacaccggcaccgcgcgcatctcgcggtactcgcaccgcaccaaggtccagcgc
ctgccgatcgagcggatcagccaggccagcgccaaccagcgctcgggacggtgcgggcgc
acctcggacggcatcgccatccggctgtactccgaggaggactacctctcccgccccgag
ttcaccgacccggagatcctgcgcaccaacctctccgcggtcatcctgcagatgtgctcc
atgggcgtggcccgcaccccggcggacgtgggcgacttccccttcctgcaggccccggat
ccgcgccaggtggcggacggggccaccgtgctgaccgagctcggcgccctggccagcggc
cggccggacgccgcgggccggacccaccccaagggcacgatcacccccgttggccgcaag
ctcgcgcgcctgcccgtggacccgcggctgggccggatgatcgtggaggccggcgagcgc
ggctgcgtgcgcgaggtcatggtgctggcggcggcgctgaccatccaggacccccgggag
cggcccaccgagcagcgcgcccaggcggacgagcagcacgcccggttcgcggacgagaac
tcggacttctccgccctgctgaacctgtggtcctacctgcgcacgcagcagaaggagctc
tccggcaaccagttccgccggctgtgccgggccgagcacatcaactacctgcgggtccgg
gaatggcaggacctggtccagcagctgcgccagctggcgaagcccctgggcatctcggtc
tcgcccgggcccgtggaccccgtgggccagcacgagccggtgcaccggtccctgctggcg
gggctgctgtcccacatcgggtcctgggacgagcgcaagcgcgagtacgccggcgcccgc
aacacccggttcgcggtgttccccggctcggcgctgttccgcaagcgccatccgttcgtg
atggccgccgagctcgtggagacctcccggctgtgggcgcgcatggtcgcgcgcatcgac
cccgactgggcggtggaggcggccggcccgctggccaagcgcacctacaacgaaccgcac
tggtcccgccgctccggatcggtcgtggcgcgagagaaggtcaccctcttcggcgtcacc
ctggtcccggaccggaccgtccagttctggcggatcgaccccgtcctgtcccgcgagctg
ttcatccggcacgccctcgtggagggcgactggcgcacccggcaccacttcttcgcgcgc
aaccgccaggcgctcgcggaggtcgaggagctggagacgcgcctgcgccggagggacctg
cgggtctcggaccaggacctgttcgagttctacgacgcgcgggtgcccgcctcggtggtc
tcggagcggcacttcgacgcgtggtggaagaagcagcgccaccgcaccccggagctgctg
gacttcgacccggcggcgctgctggccgtggacgcccaggacctggacacggaccagttc
cccaccacgttccaccaccccacggagggcggcggggtggacctggagctgtcctatgac
ttcaacccggccgccaccgcgggcgagccggacggcatcacggtcatcatccccgtgctg
ctgctcaaccagatggaccccgagcggttccgctggctcgtcccgggcctgcgggtggag
ctcgtcacggcgctgatccggtccctgcccaaggccgtgcgcaagaccgtggtgccggcc
ccggacgtggcgcgcgccgccgtcgagcgcctcgccgaggaggccgacccgcagcgggac
gacctgctgcccgcgctggagctggtcctgcgccggctgcgcggggtcgtcatcccgccg
ggttcctgggacctctcggccgtgccggcccacctcgtgcccgactaccgggtggtggac
gcccggggcgccgtcatcggcgccggccaggacctcgcggccctgcaggaccgcctcgcc
gggcagaaccggacggcgatcgccgagtccctcgcccgcgcctccggtgcgggctcgtcc
ccggctgccggcaggcccgacggcggcgccccctcccccgcggccctcgccggtgccccg
ggcacggcgggcgacggcggccgcggcgggcgcggtcgcggacggggcgggggccgcggc
gcggcggccggcccggtgctcgccgagcggcacgggctgacgacctgggacctcggggac
atcccccgcaagctggacacgaccgtctcggccggctccgggacccagcgcatcaccgga
tacccgggcctcgtggcggaggcgctgccggacgggtcccccgcggccgggctgatcgtg
caccgcacggagcaggaccagcacgccgcgcaccgcggcggggtggccgcgctgctgctg
gcccggctgccgagcccgcagcgctacgtcctggaccacctggacaaccgggagaagctg
accttcacgcagaacccccacggctccgtggaccagctcgtggccgactgcacgcgggcc
gccgtggaccgcctgctgccggaggagctgccgtacaccgcggccggcttcgaggcgctg
ttcggcacggtgcgcgccgagctgatcgacaccgtgttcgccgtgacggcggtggtcgag
cgcgtgctcgcccgcgccgcacaggtgcgccgccagctcaagggatcggtctccctggcg
atggccccggcgctgagcgacatcaaggcgcagctcgagcagctcgtcttcccggggttc
gtggcggcgaccggctggcgccacctgcagcacctgccccggtacctggacgggatgctg
cgccggatcgagcggctccagtccggtgggcacgtccagcgcgacgcccgggacatggcc
gtggtgcagtccctcgaggacgacttcgacgccgccgtggccgcgctgcccgccggccgt
cccgtgcccccggagctggaggaggtgcgctggctgctcgaggagctgcgcgtgggcctc
ttcgcccaggagctcgggaccgccgtcagcgtgtcggagaagcgcgtgcgccaggccctg
cgccgggccaccgactga
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