Citricoccus sp. SGAir0253: E7744_10320
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Entry
E7744_10320 CDS
T05972
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cig
Citricoccus sp. SGAir0253
Pathway
cig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7744_10320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cig03019
]
E7744_10320
Messenger RNA biogenesis [BR:
cig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7744_10320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
QCU78504
LinkDB
All DBs
Position
complement(2342876..2344561)
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AA seq
561 aa
AA seq
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MAPGTRLSTPPTLSPGTCRVVPLGGLGEVGRNMTTFEIDGKILIVDCGVLFPEETQPGVD
LVLPDFGYLRDRLDDVVGLVLTHGHEDHIGAVPYLLRLRPDIPLIGSTLTLALIEAKLEE
HRIRPLTLAVTEGDTERFGPFECEFVAVNHSIPDALAVAVKTTAGTILHTGDFKMDQLPL
DGRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTTEREIGPVLEGLFARAGRRIIVASF
ASHVHRIQQVLDAAAAHGRKVCLVGRSMVRNMGIAARLGYLDVPEGILVDLMQVDELPDD
QVVLMCTGSQGEPMAALSRMANGDHRIQLNAGDLVVLASSLIPGNETSVFRVVNGLMRLG
AEVVHKGMAKVHVSGHASQGELLYCYNIVRPTHVMPVHGETRHLIANGRIAEATGVPAER
VLLAENGSVVDLAEGTARITGEVECGLVYVDGSSIGEITDADLKDRRILGEEGFISVISV
VNRQTGTIVSGPDIHARGVAEDDAVFDDVKPKIARALEEAVQSNADHTTHQLQQVVRRVI
GTWVNRRLRRRPMIVPVVLEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggctccaggcacgcgcctgtccaccccgcccacgctgtcgcccgggacgtgccgcgtg
gtgccgctcggcggcctcggcgaggtcggccggaacatgaccacgttcgagatcgacggc
aagatcctcatcgtcgactgcggcgtgctgttcccggaggagacccagccgggggtcgac
ctggtcctgccggacttcgggtacctgcgcgaccggctcgacgacgtggtcggcctggtc
ctgacgcacggccacgaggaccacatcggggccgtgccctacctgctgcggctgcgcccg
gacatcccgctgatcggctccacgctgacgctggcgctgatcgaggccaagctcgaggag
caccggatccggccgctgaccctggccgtcaccgagggggacaccgagcggttcggcccc
ttcgagtgcgagttcgtggccgtcaaccactccatcccggacgccctcgcggtggccgtg
aagaccaccgccgggaccatcctgcacaccggcgacttcaagatggaccagttgcccctc
gacgggcgcatcaccgacctgcgcgccttcgcccgcctcggggaggagggcgtggacctg
ttcctgaccgactccacgaacgccgaggtccccggcttcaccaccacggagcgggagatc
ggccccgtgctggaggggctgttcgcccgcgccggccggcgcatcatcgtggcctccttc
gcctcccacgtgcaccgcatccagcaggtgctggacgccgcggcggcccacgggcgcaag
gtgtgcctcgtgggccggtcgatggtgcgcaacatgggcatcgccgccaggctgggctac
ctggacgtgcccgagggcatcctcgtggacctcatgcaggtcgacgagctgccggacgac
caggtggtgctgatgtgcaccggctcgcagggcgagccgatggcggcgctgtcccggatg
gccaacggcgaccaccgcatccagctcaacgccggggacctcgtggtgctggcctcctcg
ctcatccccggcaacgagacctcggtgttccgcgtggtcaacgggctgatgcggctcggc
gcggaggtggtgcacaagggcatggccaaggtgcacgtctccggccacgcctcccagggc
gagctgctgtactgctacaacatcgtccggcccacgcacgtcatgccggtccacggcgag
acgcgccacctgatcgccaacgggcggatcgccgaggccacgggcgtgcccgccgagcgg
gtgctgctggccgagaacggctccgtggtggacctcgccgagggcacggcccggatcacg
ggagaggtcgagtgcgggctcgtctacgtggacgggtcctcgatcggggagatcaccgac
gcggacctcaaggaccggcggatcctcggcgaggaggggttcatctccgtgatctccgtg
gtcaaccgccagaccgggacgatcgtgtccggccccgacatccacgcccgcggcgtggcg
gaggacgacgcggtgttcgacgacgtcaagccgaagatcgcccgggccctggaggaggcg
gtgcagtccaacgcggaccacaccacccaccagctccagcaggtcgtgcgccgcgtcatc
ggcacgtgggtcaaccgccggctgcggcgccgcccgatgatcgtccccgtggtcctcgag
gcctga
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