Chryseobacterium sp. IHB B 17019: ATE47_02360
Help
Entry
ATE47_02360 CDS
T04193
Name
(GenBank) type IV secretion protein Rhs
Organism
cih
Chryseobacterium sp. IHB B 17019
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
DUF6531
RHS
Mrr_cat
Motif
Other DBs
NCBI-ProteinID:
ALR29447
LinkDB
All DBs
Position
496979..501739
Genome browser
AA seq
1586 aa
AA seq
DB search
MAAQNKNVKKIKVAKPDMNPDRSLSVSADVTSFSTEKTTQGWKNGMKNNFDSLNPVSMVK
SVVGADGNAGQSGGGSGGGPSVTAEKAAPQSKVKLIKVNTPAISPTAIQHTSKHFDIVLA
IDIHWTLIPPPPSFMLIPLPLPHPFIGIVFDIMDYIKFTIPIPQFIRNLKPDLPESIPMG
GSIYVHGRHKATTTTSVMGVVIPFRHVTSLIPVYLIPFLQEAPHEGEVYYGAQTVLGQGS
KMSGNQPQQVLTCMGLPFGMTMLPAMPNKPKKNPLAYFAFYNNFSSLYIQINTGGPVLVG
GAFVPHVYTPGEMLMRFAGMALMRGLTKSLGKGVTKFNHFLQGKFGKTNPVSKALCKVGL
EPVNFASGAMLFEWDDFEIEAGIPLKWTNIWYSDRPYQHGILGNGIFNSHDLYIVPDEED
NVAAWVHPEELQPMPIPVPPIGEELTYYRSQKIWQYRPSSSIWIIRKGTDIYTYKRFHHA
TEGSIFKVIHIEYGDGTMREYDYQDRNIVLKSIKDVKSGFSIETVLHPELKKIAEVYYCY
KNKRDLQVRYDYDERGNLTHVWDIHKKAIVFEYDDQNRVIRRTNRNEMSYHWEYDKKNRV
VHTKGLEGFMEGFLNYNDEEGYTEVIYPKQNNKTERYYYDEDLLVYKQIDGEGGETWYDY
TSHNELKMIGTPEGRVQGYTYDEFGNIKTFHTPDGEEYHYQYNEFGQVIARYSPSGTSET
WIYDEEGRLISYTDPTEETINYQYLNDEKLPEGSKKQEIETHYEYNNRNQITRVTNNIGG
EQYWKYDDYGRLLVFSPRAMKRTLWNRDKMGRVVEINEPGQLPLKLRYDAYDLPVYATDG
KAEWLLSYTPMGSLKRQVRRNALTYKKEETLVFGYNAYENLMSITNEKGEVYQFERNNND
DIIGETGFDGQKKFFVRDKDGLVTQSRNPNGKNIFYEYDLGGRLTQTHYPDGTWEAYQYD
TSGMLIKADNEDSSVTFQRNKLGLVTSEKQGEHSINYEYDSEGNLIGLKSSLGAEIDYAY
NDLGQLKNVTAATKDVHQPWQMDIDISRNGQLFSRKMTGGVESIFEFDHIGMPVSQKVMV
NKTNTAFHKDYHWAAGSRLLQVLDRVTGGRTRFDYDAFGSLVAAEYSNGEIQYKNPDETG
CLYESAKRTDRIYDKGGKLMRDKNWFYHYDEEGNLLLTSKRPINNLKSHQKEEENNSHPY
YKSIAADWLNEPKLQDGDNLPNVNENPSSEIQKPEWESGDWAYSWNANGMLAKVKRPDGK
EVSFEYDALGRRISKIGNRKITRYIWDDDVLLHEWSYDIEDIPATDIDDKGELKTSSEPV
ENIVTWIYDGSGYTPVAKCIGGERYSIISDYLGTPIQAFDENGKLIWERELDLYGDIRKE
KGNFNFIPFQYQGQYYDPEIELNYNRFRYYDLDSGVYISKDPIGLLGGFGLYNYVKDTNA
LLDILGLMPNNTPIGDMAEGNFVDGLRKRGWNVYTEIKNGSQNGIDVVAQHPLTKKVHVF
EVKANTSRLSILQKGDDYIQNILDEVRNKGTLRGQKVDPSMVRTANIIDRDIRAHGIEGR
LIKYKVNKATGDATMTRMSKWPQKYS
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcaaaataaaaatgtaaaaaaaataaaggttgcaaagccagatatgaatccg
gaccgttcgctgagtgtttcggcggacgttacttcattcagcacagaaaaaaccacgcaa
ggctggaaaaacgggatgaaaaacaatttcgattccctgaatccggtttctatggtgaaa
tctgtagtcggggcagacggcaatgcaggacaatcaggaggtggaagcggaggcggacct
tccgtaacggcggaaaaggctgcgccgcaaagcaaggttaaattaattaaagttaatact
cctgccatttcacccaccgcaattcaacatacgagcaagcattttgatattgtcctggcg
atcgatatccattggactttgattccgccgccgccgtcatttatgttgattccgttgccg
ttgccccatccgtttatcgggatcgtttttgatatcatggattacataaaattcacgatt
ccgattccacaatttattagaaatttaaaaccagaccttccggaaagtattccaatggga
ggttcaatatatgttcatggaagacacaaagccacgactactacgagtgtgatgggtgtt
gtaattcctttcaggcacgttacttctttgattcccgtttacttgatcccgtttttacag
gaagctccgcatgaaggggaagtgtactacggcgcacaaaccgttctgggacagggaagt
aaaatgagcggaaatcaaccgcagcaggttctaacgtgtatgggattgccttttgggatg
accatgcttcctgccatgccgaacaagccgaagaaaaatccgctggcttattttgctttt
tataataatttctcaagtttatatattcaaattaatacgggaggccctgtgttggtgggt
ggtgcgtttgtacctcacgtttacacgccgggcgaaatgctgatgcgttttgcgggaatg
gccttaatgagagggttaacgaagagtttaggaaaaggggttactaagtttaatcacttt
ttacagggaaaattcggaaagacaaatcctgtttcaaaagccttgtgtaaagttggatta
gaaccggtaaactttgcttccggagcgatgttgtttgaatgggatgattttgaaattgaa
gccggaatacctttaaaatggacaaatatctggtacagcgacagaccgtaccaacatgga
attttaggaaacggaattttcaattctcatgatctgtatatcgttccagatgaagaagat
aatgttgcagcctgggttcatcccgaagaattgcagccgatgccgattcctgttccgccg
attggggaagaattaacgtattacagaagtcagaaaatctggcaataccgtccaagcagc
agtatctggatcatcagaaaaggaacggatatttatacctacaaacgtttccaccatgct
acggaaggaagtatttttaaggtaattcatattgaatatggcgacggaaccatgagggaa
tatgattatcaggatagaaatattgttttaaagagcattaaagatgttaaaagtggtttc
agcatcgaaacggttcttcatcctgaacttaaaaaaattgctgaagtttattattgctat
aaaaataaaagagacctgcaggttcgttatgattacgatgaacgcggaaatcttacccat
gtctgggatattcacaagaaagccatcgtttttgaatatgatgatcaaaatcgggtgatc
cgcagaaccaacaggaatgaaatgagctaccactgggaatacgacaaaaaaaacagagtg
gttcataccaaaggtctggagggtttcatggaaggttttttaaactataacgatgaagaa
ggctatacagaagtcatttatccaaaacaaaacaataaaaccgaaagatattattacgat
gaagatcttttggtgtacaaacaaatcgatggtgaaggcggtgaaacctggtatgactat
acttcccacaacgaattaaaaatgatagggactccggaaggccgtgttcagggatatact
tacgatgaatttgggaatattaaaactttccatacgccggatggtgaagaatatcattat
caatacaatgaattcgggcaggttatcgcgcgttattctccttcaggaacttccgaaaca
tggatttatgatgaagaaggaagattaataagttatacagatcctacggaagaaacaatt
aattatcaatatttaaatgatgaaaaacttcctgaaggcagtaaaaaacaggaaattgaa
acacattacgaatacaacaaccgaaaccaaatcacaagagtaaccaacaatatcggaggc
gaacaatactggaagtatgatgattatggaagattgctggttttcagtccgagagctatg
aaaagaacactctggaatcgggataagatgggccgtgtggttgaaataaatgagccggga
caattgccattaaagcttcgttatgatgcttatgatcttccggtttatgcaaccgacgga
aaggcagaatggttgctgagctacactccgatgggaagcctgaaacgtcaggttcggaga
aatgctttaacttataaaaaagaagaaaccctggtttttggctataacgcttatgaaaac
ctgatgagcatcaccaatgaaaaaggcgaagtttatcaatttgaaagaaataacaacgac
gatattattggggaaaccggtttcgacggacagaagaaattctttgtaagggataaggac
ggattagttactcaaagtcgaaatccgaacgggaaaaatattttttacgaatatgattta
ggcggaagattaacgcagactcactatcctgacggaacctgggaagcgtatcaatacgat
acttcggggatgttgataaaagctgataatgaagacagcagcgtaactttccagagaaat
aaactgggattggtaaccagcgaaaaacaaggcgaacattccattaattatgaatacgac
agtgaaggaaacctgattggcttaaaaagcagtttaggcgcagaaatcgactatgcttat
aatgatcttggccagcttaaaaacgtgactgcagctacaaaagatgttcatcagccttgg
cagatggatatcgacataagccggaacgggcaattattctcccgtaaaatgaccggtggt
gtcgaaagtattttcgaatttgatcatatcggaatgcctgtaagtcagaaagtaatggtg
aataaaaccaatacggctttccataaagattatcattgggcagccggaagccgattatta
caggttttagatagggtaacgggtggaagaacaagattcgattatgacgctttcggaagt
ttggttgcggcggaatattcaaacggcgaaattcagtacaaaaatcctgatgaaacgggc
tgtttatatgaaagtgcaaaacgaaccgaccgaatttatgacaaaggcggaaagctgatg
cgcgacaaaaattggttttatcattacgatgaagaaggaaatttattattaacaagcaaa
aggccaattaataatttaaaatcacatcaaaaagaagaagaaaataattctcatccatac
tacaaatctatcgccgcagactggttgaatgaaccgaaattgcaggatggagataattta
ccaaacgttaatgaaaatccttcatccgaaattcaaaaaccggaatgggaaagcggagat
tgggcgtattcatggaatgcgaatggaatgctggcaaaagtaaaacggccggatgggaag
gaagtgagctttgagtatgatgcgctcggaagaagaatttcaaaaattggaaatagaaaa
ataacgcgctatatttgggatgacgatgtattgttgcatgaatggagttatgatatagag
gatattccagcaactgatattgatgataaaggtgaattgaaaacaagttcagaacctgta
gaaaatattgtgacctggatatatgacggaagtggatatactcctgttgcaaaatgtatt
ggaggtgaaagatattctattataagcgattatttaggaacaccgattcaggcatttgat
gaaaatggaaaactcatttgggaaagggagcttgatctttatggagatataagaaaagaa
aaaggaaattttaattttataccttttcaatatcagggacagtattatgatccggaaatt
gagttgaattacaatagatttcgttattatgacctggattccggagtttatattagtaag
gacccaattggattattaggtggtttcgggttatacaattatgtgaaagatactaatgca
ttgttggatattctaggtctgatgcctaataatacgccaattggtgatatggcggaagga
aattttgtagatggattaagaaaaagaggatggaatgtttataccgaaattaaaaatggt
tctcaaaatggtattgatgttgttgcacagcatcctttaacgaagaaagtacacgttttt
gaagtaaaagcaaacacttcaagactaagcattttgcaaaaaggagatgattatattcag
aacattttagatgaagtaagaaacaaaggaacattacgagggcaaaaagttgatccttca
atggtaagaactgcaaatattatagacagagatatcagagctcacggcattgaaggaagg
ctgattaaatataaagtaaataaggcaactggcgatgctacaatgacaagaatgagtaag
tggccacagaaatattcataa
DBGET
integrated database retrieval system
