Chryseobacterium sp. IHB B 17019: ATE47_02550
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Entry
ATE47_02550 CDS
T04193
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE47_02550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cih03019
]
ATE47_02550
03009 Ribosome biogenesis [BR:
cih03009
]
ATE47_02550
Enzymes [BR:
cih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATE47_02550
Messenger RNA biogenesis [BR:
cih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE47_02550
Ribosome biogenesis [BR:
cih03009
]
Prokaryotic type
rRNA helicases
ATE47_02550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALR29474
LinkDB
All DBs
Position
548050..549762
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AA seq
570 aa
AA seq
DB search
MNLFTETNLSPDILKAVGELGFESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDETSRKIQFLVLCPTRELCLQITKDIKNYSKYMKDIKTTAVYGGSSIMDQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILRETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVTGYRQKKEVLKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSS
TKIDIVESTVPTGKDIIKAQVGGVFESLFEVHEDFFEFDDSLIPDLSAFTKEELVHKLLQ
FQLKDLAMYYKDRHDLIEQKLSSRDDDFSKRGDRRDRDRGRDRDRGERGERNDSRGSRER
GGKPRRKNEDMVRFFFNLGKKDQLKKLDVLDIINKATSTGKSKKRAEIGDIEILEKFSFF
EVEKSFKGDLLSNISTMKFKGKDMRAEEAN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatattcttaaggcagttggcgaactg
ggcttcgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgaaacgagtcgcaaaatccaatttttggtgctttgtccgaca
cgagaattatgtcttcaaattacaaaagacataaaaaactattccaagtacatgaaagac
atcaaaactacagcagtttacggtggaagtagtattatggaccagatcagatctttgaag
gataaaccacagattattgtagggactccgggaagggtgattgaccttatcaacagaaaa
gcattggacttttcagcaattcactggttggttttagacgaggccgatgaaatgctttca
atgggtttcaaagacgaattggaaacaattttaagagaaactcctgaaacaaaacaaact
ttcctgttctctgcaacgatgaacaaggaggtggagagaatttctaaaaattatcttaca
aagccacacagaatttctgtaggttctattaacgaggttaagaagaacattaaacatgaa
tattatgtgacagggtaccgtcagaaaaaagaagttcttaagagattaattgattccaac
ccgaatcaatattcaattattttctgcagaacaagaatggaaactcaggaagttgccgat
ttcctaatgcagaatggctatgcagcagatgcgcttcatggtgatctttctcaggctcag
agagatacggtaatgaagaagtttagattgaaaaatatcgatattcttgtagcgacggat
gttgcagcaagaggattggatgtggactctcttactcacgttatccactactctttacct
gatgatccggaagtattcgttcacagaagtggtagaacgggtagagctggaaaagacggg
atttcaatggcgttgattaagcctgaagaaagcagaaaactgaagcaaatcaaatcatct
acgaagattgatattgttgaaagtactgttcctacaggaaaagatattatcaaagctcag
gtaggaggtgtttttgagagtcttttcgaagtacatgaagatttctttgaatttgatgat
tctttaattcctgatttatcagcgtttacaaaagaagagcttgttcataagttgcttcag
ttccaattgaaagatcttgcgatgtattacaaagacagacatgatcttatcgagcagaaa
ttgagcagccgtgatgacgatttctcaaaaagaggagacagaagagaccgtgacagaggc
agagaccgcgacagaggtgagagaggagaaagaaatgacagcagaggtagtagagagcgt
ggtggaaagccgagaagaaagaacgaagacatggtaagattcttctttaatctgggtaaa
aaagatcaattgaagaaacttgacgttttggatattatcaacaaagctacatccactgga
aaaagcaaaaaaagagctgaaatcggggatattgaaattttagagaaattttctttcttt
gaagttgaaaaatctttcaaaggagatcttttaagcaacatttccacaatgaaatttaaa
ggtaaagacatgagagctgaagaagctaattaa
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