Chryseobacterium sp. IHB B 17019: ATE47_08445
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Entry
ATE47_08445 CDS
T04193
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE47_08445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cih03019
]
ATE47_08445
03400 DNA repair and recombination proteins [BR:
cih03400
]
ATE47_08445
Enzymes [BR:
cih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATE47_08445
Messenger RNA biogenesis [BR:
cih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE47_08445
DNA repair and recombination proteins [BR:
cih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATE47_08445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
ALR30555
LinkDB
All DBs
Position
complement(1829897..1832101)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIENLLEGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKEDYLDFLKDVKISFVAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMANALVFKESFNRPNLYYEVRPKVNVDKEIVKFINHNKTKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKIRVANQDKFLMEEADVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGENFDPINGDGAKMCDNSTNPPKLKDATADLKKV
LELIRDTGEKFKSKDLISVIAGKENAVTKSYKLEHSPYFGFGKEEKDNHWKTVLRQATVQ
NFLLKDIETYGVLKISEKGKLVLEGKLEHSFLIAEDREFDLTQTKAESDQIQMQSTGGLD
QNLFTLLKDLRKKVAKKHGIPPYTVFMDPSLEDMTVQYPITVEEIAKIYGVGEGKAKKYG
KEFADFISKYVEENNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMDE
LLKEMESIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMTESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgagttgaaaaaatatttcgggttttctact
tttaaaggccagcaagaacaaattatagaaaacctgttagaagggaaggatatatttgtc
ttaatgcctacaggaggtgggaaatccttatgttatcagcttccggcacttatttcggaa
ggtactgcaattgtagtttctcccttaatagcattaatgaagaatcaggtagatgctgta
aacggcctttcatctgatgacggagtggcacacgttttaaattcatcattaaataaaaca
caaaccaaacaggtcttcgacgacatcaaaagtggtaagacaaaacttttatatgtcgcc
ccggaatcgttgatcaaggaagattatctggactttttaaaagatgtaaaaatatctttt
gttgctattgacgaggcccactgtatatcagaatggggacacgacttcaggcccgagtac
aggaatttgaagtccattattgataaaattgccgatgtacccgtaattgcattaacggca
accgcaactcctaaggttcaggatgatatccaaaaaacattgggaatggcgaatgccctg
gttttcaaggaaagcttcaacaggccgaacctgtattatgaagtacgcccgaaagtcaat
gtagataaagagatcgttaaatttatcaatcataataaaacaaaatcaggaattgtttac
tgtttaagccgaagaaaggtggaagaatttgcccagcttttgcaggtaaacggaatcaat
gctctgccttaccacgccggtctcgaccaaaaaataagggttgccaatcaggacaaattt
ttaatggaagaagctgatgtaattgttgcgacgattgcatttgggatgggaatcgacaag
ccggatgtgcgttttgtgatccattacgatttcccgaaatcccttgaaagttactaccag
gaaaccggccgtgcgggacgggatggcggtgaaggccactgtctggcgttctacgatccg
aaagatattgaaaaactggaaaaatttcttgcccaaaaacctgtttccgagagagaaata
gggttgcagcttttaaatgaagtcgttggctatgccgaaacttcaatgagcagacgacag
tatattttatattattttggagaaaattttgacccaattaatggtgatggcgcaaaaatg
tgcgacaattccacaaatccaccaaaattaaaagacgcaaccgctgatttgaaaaaagta
ctcgaacttatccgggatactggggaaaaattcaaatctaaagatttaatttctgtgatt
gcaggaaaagaaaatgccgtaaccaaatcttataaactagagcatagtccttatttcggc
ttcggaaaagaggaaaaagacaatcattggaaaacggttttaagacaggcgacagttcag
aatttcttattaaaagatattgaaacgtatggtgttttaaagatctccgaaaaagggaag
ttggttttagaaggaaaactggaacattcatttttaattgcggaagaccgggaatttgat
cttacccaaacgaaagctgaaagtgatcagatccagatgcagtcaacaggaggtttggat
cagaatttatttactttattaaaggatttacgtaaaaaagtagcaaaaaaacacggaatt
ccaccctatacagtttttatggacccaagtctggaagatatgacggttcagtacccgatt
actgttgaagaaattgcaaaaatctatggagttggggaaggaaaggctaaaaaatatggg
aaggaattcgcggattttatcagtaaatatgtagaagaaaataatatcgaacgcactcag
gatatggtattgaaacaagtggcgaataaatccagccataaagtattcatcatccagagt
accgataaaaaaattgaccttgaagatattgccagagctaaaaacctttcaatggatgaa
ctgttgaaagaaatggaaagcattgtctatcagggtactaaattgaatatcgactattac
attgaagataattttgatgaagatattgtcgacggcttcatggaattcatgactgaatcc
gaaagtgacagcatgaaagttttactcgatgaattcggggacgaactttctgatgaagaa
gtgaggatgttgagaataaaattcatcagcgacgttgccaactaa
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