Corynebacterium ihumii: CIHUM_01770
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Entry
CIHUM_01770 CDS
T09115
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cihu
Corynebacterium ihumii
Pathway
cihu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cihu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIHUM_01770 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cihu03021
]
CIHUM_01770 (rpoC)
03400 DNA repair and recombination proteins [BR:
cihu03400
]
CIHUM_01770 (rpoC)
Enzymes [BR:
cihu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIHUM_01770 (rpoC)
Transcription machinery [BR:
cihu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIHUM_01770 (rpoC)
DNA repair and recombination proteins [BR:
cihu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIHUM_01770 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WCZ33797
UniProt:
A0ABY7UEB0
LinkDB
All DBs
Position
353556..357554
Genome browser
AA seq
1332 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIVTSVDEEARHTDMSTLEAEMLMEKKDVEDDTNSEIADRAQKLEED
LAELEASGATAAARKKVQNAADKEMQHMREAGEREVERLDEIWTTFQKLAPKQMIIDENL
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELRGIIAEGKGQKKVRALKRLRVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGTRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKRMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAIPRLDMVTGLYFLTMEKSPQEIGGE
GAYAPADDNGPARGVYSSYREAIMAYDLGVLGLQAPIQVRIDHLRPTPEIEQEQFPDGWS
KGQAWTTETTLGRIMFNELLPFNFPYQEGAMVRKGGGGGKVLLGDIIQSMVEKYPMITVA
QVLDKMKDAGFYWATRSGITISMADVLILPNKTEVLEQYEKEAEAIERKFWEKGALTEEN
RYDRLVELWQDATNKVGQAVEDLYPDHNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTRQGVRVPVAVESGDSFVRHDLVETSVSGRVLSADVKDSDDKVIAEAGAELTEERID
ELVAAGVTQIKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTISLEDEGNFWTLTIHPDD
GSDVVVYEKLSKRQGLAQVRRPMESNPDAMIERGLREGDHVEVGERLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDSGSTEFLPGTLVDLS
EARQVNAAAVADSGEPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDK
LIGLKENVIIGKLIPAGTGISRYRNIQVKPTEAARSAAYSIPTFGDSIYGDEGYGEFTGA
SVPMDEFGFEEL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagcttcgcatcggcctggccaccgccgacgacatc
cgccgttggtcccacggcgaggtgaagaagcccgagaccattaactaccgcaccctcaag
ccggaaaaggacggcctgttctgcgagcgcatcttcggcccgacccgcgactgggagtgc
gcctgcggcaagtacaagcgtgtccgctacaaaggcatcatctgtgagcgctgcggcgtt
gaggtgaccaagtccaaggtgcgccgcgagcgcatgggccacatcgagctggccgctccg
gtgacgcacatctggtacttcaagggtgtcccgtcccgcctgggctacctgctcgacctg
gcaccgaaggacctcgagcgcatcatctacttcgcggcgaacatcgtcacctccgttgac
gaagaggcccgccacaccgacatgtccacccttgaggcggagatgttgatggagaagaaa
gatgtcgaggacgacaccaactccgagatcgcggaccgcgcgcagaagctggaggaggac
ctcgccgagctcgaggcttccggtgcgaccgctgctgcccgcaagaaggtgcaaaacgct
gcggacaaggaaatgcagcacatgcgcgaggccggcgagcgcgaggttgagcgcctagac
gagatctggaccaccttccagaagctcgcgccgaagcagatgatcatcgacgaaaacctc
tacgaggagctcgtcgaccgctacgaggactacttcaccggcggcatgggtgccgaggcg
atccagaccctgatccgcaacttcgacctggaggctgaggctgaggagctgcgcggcatc
atcgccgagggcaagggccagaagaaggtccgcgcgctgaagcgcctgcgcgtcgtcgcg
gccttccagcgctccggcaacgacccggccggcatgatcctggacgcgatcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacctcggatctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgtttgaagcgcatgatcgacctg
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgttgacgcc
ctgttcgacaacggccgccgcggccgtccggtcaccggcccgggcacccgtccgctgaag
tccctgtccgacctgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggactactctggccgttccgtgattattgtcggcccgcagctgaagctgcacgag
tgcggtctgccgaagcgtatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggacaacgactacgcgcagaacatcaagtccgccaagcgcatggtggagcgccagcgc
cccgaggtgtgggacgtgctggaagaggcgatttcggagcacccggtgctgctcaaccgc
gcgccgacgctgcaccgcctgggtatccaggccttcgagccgaagctggtcgaaggtaag
gccatccagctgcacccgctggcctgtgaggcgttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgtccgccgaggcgcaggctgaggcccgcgtgctcatgctg
tcgtcgaacaacatcctgtccccggcgtctggcaaaccgctggctataccgcgcctcgac
atggtcaccggtttgtacttcctgaccatggagaagagcccgcaggagatcggcggcgag
ggcgcgtacgcacctgccgacgacaacggtccggcccgtggcgtctactcgtcctaccgc
gaggccatcatggcttacgacctgggcgttttgggcctgcaggcgccgatccaggtgcgc
atcgaccacctgcgtccgacgccggagatcgagcaggagcagttcccggacggctggtcg
aagggccaggcatggaccaccgagaccaccctcggccggatcatgttcaacgagctgctg
ccgtttaacttcccgtaccaggaaggcgccatggtccgtaagggcggtggcggcggcaag
gtgctgctgggcgacatcatccagtcgatggtggagaagtacccgatgatcaccgtcgct
caggtgctggacaagatgaaggacgccggcttctactgggccacgcgttccggcatcacc
atctccatggccgacgtgctcatcctcccgaacaagaccgaggtcctcgagcagtacgag
aaggaagccgaggccatcgagcgcaagttctgggagaagggtgcgctgaccgaggagaac
cgttacgaccgcctggtcgaactgtggcaggacgccaccaacaaggtgggtcaggccgtg
gaggacctgtacccggaccacaacccgattccgatgatcgtgaagtccggtgctgccggt
aacatgcgccagatctggaccctggccggcatgaagggcatggtcgtgaactcgcgcggc
gagtacatcacccgcccgatcaagacctccttccgcgagggcctgtcggtgatggagtac
ttcaacaactcccacggttcccgtaagggcctggccgataccgcgcttcgtaccgcggac
tccggctacctcacccgtcgtctggtggacgtggcgcaggacgtcatcgtccgcgaagag
gactgtggcacccgccagggcgtcagggtgcccgttgcggtcgagtccggcgactctttc
gtgcgccacgacctggtcgagacctccgtgtccggccgtgtcctgtcggccgatgtcaag
gactccgacgacaaggtcatcgccgaggctggtgccgagctgaccgaggagcgtatcgac
gagctcgtggcagccggcgtcacccagatcaaggtccgctccgtgctgacctgccagacc
ccgaccggtgtctgtgccaagtgctacggcaagtccatggcgtccggccagctcgtcgac
atcggcgaggccgtcggcatcgtggccgcgcagtccattggtgagccgggtacgcagctg
accatgcgtaccttccaccagggcggcgtcggcggcgacatcaccggtggtctgccgcgt
gtgcaggagctgttcgaggctcgtgtgccgaagaaccgcgccccgatcgcgtccgttgct
ggcacgatctcgctcgaggacgagggcaacttctggaccctgaccatccacccggatgac
ggctccgacgtggtggtctacgagaagctgtccaagcgccagggcctggcccaggtgcgc
cgcccgatggagtccaacccggacgccatgatcgagcgcggcctgcgcgagggcgaccac
gtcgaggtgggcgagcgcctgctccgcggcgctgccgacccgcacgacgtgctcgaggtc
ctcggccgccgtggtgtggagaagcacctgatcgacgaggtgcaggccgtgtaccgcacc
cagggtgtgtccatccacgacaagcacatcgagatcatcatccgccagatgctgcgtcgc
ggcaccgtcatcgactccggttccaccgagttcctgccgggcaccctggtggatctgtcc
gaggcgcgccaggtcaacgccgcagctgtggcggacagcggcgagccggcggagatgcgc
tccgagatcatgggcatcaccaaggcctcgctggccacggagtcctggctgtcggcggcc
tccttccaggagaccacccgcgtgctcacggacgccgcgatcaacaagcgctccgacaag
ctgatcggcctgaaggagaacgtgatcatcggcaagctgatcccggccggtacgggcatt
tcccggtaccgcaacatccaggtcaagccgaccgaggctgcacgctccgcggcgtactcc
atcccgacgttcggcgactccatctacggcgacgagggctacggcgagttcaccggcgcc
tccgtgccgatggacgagttcggcttcgaggagctgtaa
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