Corynebacterium ihumii: CIHUM_03935
Help
Entry
CIHUM_03935 CDS
T09115
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cihu
Corynebacterium ihumii
Pathway
cihu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cihu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIHUM_03935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cihu03400
]
CIHUM_03935 (mfd)
Enzymes [BR:
cihu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIHUM_03935 (mfd)
DNA repair and recombination proteins [BR:
cihu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIHUM_03935 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
CbiX
AAA_22
MFD_D3
RecG_dom3_C
AAA_16
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WCZ34221
LinkDB
All DBs
Position
783653..787285
Genome browser
AA seq
1210 aa
AA seq
DB search
MTETTPPVLGGLLTAALTDPKLKGLVTHVGEDSLHVTGIDQVRSWAAGAIAREAPVLLVT
ATGHEAEDLAAELKAILGEEKVAQFPAYETLPHERLSPAPDIVGRHSKVLWEMPRVIVAA
ARAVCQPVLPPAQPISIAVDQEHDFEDLTAKLVHFAYNHVDMVAQRGEFATRGGIIDVFP
TTAQNPVRIEFWGDEVTDIRSFAVADQRTIEEVRSVDLHPARQLLIDDTVAAKADDLARK
FPSNPTLSSLLARISEKQPADGMEALIPALTDKQYSVLPELMPAGSVVMVTNPEKVRTRI
ADLEATDREFLEAGWEAAAMGAEGPVVVEGLDVSASSYRSYESLEVSASKAGNAWWTFAP
PGMFAADDADTLPLEFEAAPAPKGDPKAIEQLYATLKLYIGQNHGKVAFVAPAKGTIDRM
AERLREHGISARVATPGLEPVEGAVTLYQALSHAGLVFGGPNLVVVTETDVTGNRVGDIA
GAKRRAPRRRNRVDPLALQPGDFVVHDTHGIGKFVKMAERTVKAGDEDSRREYIVLEYQP
AKRGQPGDQLWVPMESLDLLSKYTGGEKPSLSKMGGSDWKSTKRKARAAVREIAGELVEL
YAKRQAAPGHAFAPDTPWQHEMEDAFPFVETEDQLTAIDAVKSDMEKPTPMDRVIVGDVG
FGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHFSTFNQRMDGFGVTVRELSRFTTAAE
SKKIISGLADGSVDIVIGTHRLLQTGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDV
LTMTATPIPRTLEMSLTGIREMTSITTAPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQ
VFYIHNKVSDIEKTARQLRELVPEARIVVAHGQMSEQVLEQTVQGFWNREYDIMVCTTIV
ETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDKTLTETSYDRLA
TIAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVSEAVETFKGLMS
GEPVDATDKGPKEIRVDLPVDAHIPETYINSERLRLEVYRKLAEARDDDALTAAADDMID
RFGALPSEVEHLMAVARLRNQAREVGVSDILTQGSRIKLHPVELPDSKQVRLKRLYPGAN
FRAAAKALQVPMPREGGAKRALNAPNLRDTELLQWVADFMTEMLDAPQISVAGATKAEEK
PKKKVFSVSE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaccaccccgcccgtgttgggcggtttgctcacggcggcgctgacggacccg
aagttgaaggggctggtcacgcatgtgggcgaggattcgttgcacgtcactggcatcgac
caggtgcgctcttgggcggctggtgcgattgcgcgcgaggcgccggtgcttttggtcacg
gctaccggccacgaggcggaggatcttgcggcggagctgaaggccattttgggcgaggag
aaggtcgcgcagttcccggcgtatgagacgctgccgcacgagcgtctttcgccggcgccg
gacattgtggggcgccactcgaaggtgctgtgggagatgccgcgcgtgatcgtcgcggcg
gcgcgcgcggtgtgccagccggtgctgccacctgcccagccgatcagcatcgcggtggac
caggagcacgactttgaggacctgaccgcgaagctggtgcacttcgcgtacaaccatgtg
gacatggtggcgcagcgcggcgagttcgccacccgcggcggcatcatcgatgtcttcccg
actaccgcgcaaaacccggtacgcatcgagttctggggcgacgaggtcaccgacatccgc
tcgttcgcagtcgcggaccagcgcaccatcgaagaggtgcggtcggtcgatctgcaccct
gcgaggcaattgcttatcgacgataccgtggccgccaaggccgacgacctcgcgcgaaag
ttcccctcgaacccgacgctgtcgtcgctgctggcccgcatctcggagaagcagccggcg
gacggcatggaagcgctcatcccggcgctgacggacaagcagtactcggtgctgccggag
ctcatgcccgccggctccgtggtgatggtgaccaacccggagaaggtgcgcacccgcatc
gctgatttggaggcgacggaccgcgagttcctcgaggccggctgggaggcagccgccatg
ggtgccgaggggcctgtggtggtggagggcctggacgtgtccgcctcgtcgtaccgctcg
tacgagtcgctggaggtctccgcctccaaggccggcaacgcctggtggacgttcgccccg
cccgggatgttcgccgccgacgacgcagacacgctgccgctggagttcgaggccgcgcct
gcgccgaagggcgacccgaaggcgattgaacagctctacgccacgctgaagctctacatc
ggccaaaaccacggcaaggtggcgttcgtggcgccggctaagggcacgatcgaccgcatg
gcggagcgcctgcgcgagcacggcatctccgcccgcgtggccacgcccggattggagccc
gtcgagggcgcggtgacgctgtaccaggccctgtcgcacgcgggcctggtcttcggcggg
ccgaacctggtcgtggtcaccgaaacggacgtcaccggcaaccgcgtgggtgatatcgca
ggtgctaaacgacgggccccgcgccgccgcaaccgcgtcgacccgcttgccctgcagcct
ggcgacttcgtggtgcacgacacccacggcatcggcaagttcgtgaagatggcggagcgc
accgtcaaagccggcgacgaggactcgcgccgcgagtacatcgtgctggagtaccagccc
gccaagcgcggtcagcccggcgaccagctttgggtgccaatggagtctctggacctgctg
agtaagtacaccgggggcgagaagccgtcgcttagcaaaatgggcggctcagactggaag
tcgacgaagcgcaaggcgcgcgccgcggtccgcgagatcgcaggcgagctggtggagctc
tacgccaagcgccaggccgcgccgggccatgcgttcgcgccggacaccccgtggcagcac
gagatggaagacgccttcccgttcgtggagaccgaagaccagctcaccgccatcgacgcg
gtgaagtcagacatggaaaagcccacgccgatggaccgcgtcatcgtgggcgatgtgggc
ttcggcaaaaccgaggtcgccgtgcgcgccgcgttcaaggcagtccaggacggcaagcag
gtcgcggtgctcgtgcccacaacccttctggcccagcagcatttctccacgttcaaccag
cgcatggacggcttcggcgtaaccgtgcgcgaactgtcgcgctttaccaccgccgcggag
tcgaagaagatcatctcggggcttgcggatggctcggtggacatcgtcatcggcacccac
cgcctgctgcagacgggcgtgcagtggaagaacctcggcctgatcatcgtggacgaggag
cagcgcttcggcgtcgaacacaaggaacacatcaaggcgctgaaatcgcacgtggacgtg
ctgaccatgaccgcgacgccgatcccgcgcaccctggagatgtcgctgaccggcatccgc
gagatgacctccatcaccaccgcgccggaggaccgccaccccgtgctgacctatgtcggc
ccgcaggaagacaagcaggtcgccgccgcgatccgccgcgagctgctccgcgacggccag
gtcttctacatccacaacaaagtctccgacattgaaaagaccgcccgccagcttcgcgag
ctggtcccggaggcacgcatcgtcgtcgcccacggccagatgagcgagcaagtgctcgag
cagaccgtgcaggggttttggaaccgtgagtacgacatcatggtctgcaccaccatcgtg
gaaaccggcctggacatcgccaacgccaacaccctgatcgtggaaaacgcccagaacatg
ggcttaagccagctgcaccagttgcgcgggcgcgtggggcgctcccgcgagcgcgcctac
gcgtactttttgtacccgaaggacaaaacgctcacggagacttcctacgaccgactggcc
accatcgcccagaacaacgacttaggctccggcatcgccgtggcgcaaaaggacctggag
atgcgcggcgccggcaacgtgctgggcgccgagcagtccggccacatcgccggggtgggc
ttcgacatgtatgtgcgcctagtcagcgaggccgtggagaccttcaagggactgatgagc
ggcgagcccgtcgacgccaccgacaagggccccaaggaaatccgcgtggacctgcccgtg
gacgcccacatcccggagacctacatcaactccgagcgactgcgcctggaggtctaccgc
aagctcgccgaggcgcgcgacgacgacgccctgaccgccgccgccgacgacatgatcgac
cgtttcggtgccctgccgagcgaggttgagcacctcatggcggtggcgcggctgcgcaac
caggcccgtgaggtgggtgtttccgacatcctcacccagggcagccgcatcaagctgcac
ccggtggagctgccggactccaagcaggtgcgcctgaagcgcctttacccgggtgcgaac
ttccgcgccgcggcgaaggcgctgcaggtgccgatgccgcgcgaaggtggcgcgaagcgc
gccctgaacgcgccgaacctgcgcgatacggagctgttgcagtgggtggccgacttcatg
acggagatgctcgacgcgccgcagatctcggtcgcgggggccaccaaagctgaggagaag
ccgaagaagaaggtgttctccgtcagcgagtag
DBGET
integrated database retrieval system
