Corynebacterium ihumii: CIHUM_06780
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Entry
CIHUM_06780 CDS
T09115
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cihu
Corynebacterium ihumii
Pathway
cihu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cihu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIHUM_06780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cihu03019
]
CIHUM_06780
Messenger RNA biogenesis [BR:
cihu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIHUM_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WCZ34770
UniProt:
A0ABY7UFE5
LinkDB
All DBs
Position
complement(1375786..1377924)
Genome browser
AA seq
712 aa
AA seq
DB search
MNEPRNRARKVTRKAGPPEATEQQPVFQAPSDAPVNGSGNDAPAERDGGNNGNNGGNGRG
GRDGGNGNNGNGGNNNRGGNARGGRGGEDRDNNKGNGNGGGSNRNRRRRGRGGNGGGQGG
GRRNPMKSMQGADLTKRLPAPSKPAKDTLRIYALGGISEIGRNMTVFEYNGRLLIVDCGV
LFPNSDEPGVDLVLPDFGPIENKLDKIDALVVTHGHEDHIGAIPWLLKLRSDIPIYSSKF
TNALIKAKTQEHRQRPKLNDVNTDSEVTVGPFRLRFWHVNHSIPECLGVSIKTGAGHVVM
TGDVKVDQTPYDGKPTDIPALARLGDEGIDLFMCDSTNATVPGISASEAGIEETLTRLVS
NARQRVVIASFASNVARVQMAINAAVSNNRKVAFNGRSMLRNMEIAEKMNLLKAPKGTII
PIEEAAKMAPHKTVLITTGTQGEPMAALSRMSRREHRQITIHDGDTIILSSSLIPGNEEA
VFAVINNLAQIGANVITNAEAHVHASGHGYAGELLALYNAARPRNAMPVHGEWRHMRANK
ELAISTGVKPNNTALAQNGVVVDMHKGNIKVAGQYQVGQLYVDGTTMGDVDPDVLADRTS
LASGGVVSITCVIDDSTGRLLEAPQVSTTGYSDDDRDFNKKVVEGVEAVMGDLAAEGEND
PFRMVQQIRRKVSRAIEQNYKRQPVILPTVVPMSSDNHIASEDEIASTRESR
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaccccgcaaccgcgcacgcaaggtgacgcgtaaggctgggccgccggaggca
accgaacagcagccggtattccaagcaccgagcgacgctcctgtaaacggcagcggcaac
gacgcgccagctgaacgcgacggtggaaacaacggcaataacggcggcaacggccgtggc
ggccgcgatggcggcaacggcaataacggcaacggcggcaacaacaaccgtggcggcaac
gcccgcggtggccgtggtggcgaagaccgcgacaacaataagggcaacggcaacggcggt
ggcagcaaccgcaaccgtcgtcgtcgtggccgtggcggcaacggcgggggccagggcggc
ggccgccgcaacccgatgaagtcgatgcagggcgccgatctgaccaagcgcctgcccgca
ccgtcgaagccagcgaaggacacgcttcgcatctacgcgctcggcggcatttccgaaatc
ggccgcaatatgacggtcttcgagtacaacggccgcctgctcatcgtggactgcggcgtg
ctgttccccaattcggacgagccgggcgtggacttggtgctgccggacttcggcccgatt
gaaaacaagctggacaagatcgacgcactcgtggtcacgcacggtcacgaggaccacatt
ggtgctatcccgtggctgctcaagctgcgcagtgatattccgatctactcgtccaagttc
actaacgcgctgatcaaggcgaagacgcaggagcaccgccagcgtccgaagctcaacgac
gtgaacacggattccgaggtcaccgtcggcccgttccgtctgcgcttctggcacgtcaac
cactcgatcccggagtgcttgggcgtgtccatcaaaactggtgcgggccacgttgtgatg
accggcgacgtgaaggtggaccagacgccatacgacggcaagccgacggacatcccggcg
cttgcccgcctcggtgacgagggcatcgacctgttcatgtgcgattccaccaacgccacc
gttccgggcatctccgcctcggaggccggtattgaggagacgctgacacgcttggtgtcc
aatgcccgccagcgtgtggtcatcgcgtcgttcgcctccaacgtggcgcgcgtgcagatg
gctatcaatgccgctgtgtccaacaaccgcaaggtcgccttcaacggccgttccatgctg
cgcaacatggagatcgcggaaaagatgaacctgctcaaggctccgaagggcacgatcatc
ccgatcgaggaagccgcgaagatggcgccgcacaagacggtgctgatcactaccggcacc
cagggtgagccgatggctgcgctgtcgcgcatgtcccgccgtgagcaccgccagatcacc
atccacgacggcgacacgatcatcctgtcgtcctcgctcattccgggcaacgaggaagca
gtgttcgcggtgatcaacaacctcgcgcagatcggcgcgaacgtgatcaccaacgccgag
gcgcacgtccacgcgtccggccacggctatgccggcgagctgctcgcgctctacaacgcg
gcgcgtccgcgcaacgcgatgccggtgcacggcgagtggcggcacatgcgcgccaacaag
gagctggcgatctccactggcgtcaagccgaacaacacggcgctcgcccagaacggcgtg
gtagtggacatgcacaaaggcaacattaaggttgccggccagtaccaggtgggccagctc
tacgttgacggcaccaccatgggcgacgtggacccggacgtgttggcggaccgcacctcg
ctggcgtccggcggcgttgtgtccatcacttgcgtgatcgacgacagcaccggccgcctg
ctggaggcgccgcaggtgtccaccacgggctacagcgacgacgaccgcgacttcaacaag
aaagtcgtcgagggcgttgaagccgtcatgggcgatctggccgccgagggcgaaaacgat
ccgttccgtatggtgcagcagatccgccgcaaggtctctcgcgcaatcgagcagaactac
aagcggcagcctgtgattctgccgactgtggtgccgatgtcgtcggacaaccacatcgcc
agcgaggacgagatcgcgtccacccgcgagtcccgctaa
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