Citromicrobium sp. JL477: WG74_10550
Help
Entry
WG74_10550 CDS
T04089
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cij
Citromicrobium sp. JL477
Pathway
cij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WG74_10550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cij03400
]
WG74_10550
Enzymes [BR:
cij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WG74_10550
DNA repair and recombination proteins [BR:
cij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WG74_10550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALG61223
UniProt:
A0A8D4CJQ7
LinkDB
All DBs
Position
2160175..2163666
Genome browser
AA seq
1163 aa
AA seq
DB search
MPDLSRILSAKQPLTFANLARGSQPLVMADLARAAHKRAVFVAPDDSAMRAVADAARYFA
PELSVIELPAWDCLPYDRASPALSISTQRLSALHRLQAEKGAPQLLVTTANAVVQRMLTP
FRIREAVRELKPGVHIGHESLTQLLQKQGYSRTDTVIDAGEFAVRGSIFDIFPSGLEQGL
RLDFFGDELESLRLFDPNTQRTTGTLDSFLLLPASEVLLEDATIKRFRAGYRERFGANAT
QDPLYEAVSEGRRQAGMEHWLPLFEEKLATLFDHLGTSDPVVIDVGALAAFEERLGDIAE
YRRTRTETAGQKAGSYRPLDPQALYLTEDEIGTTLETRPVHRATGFDEPESDSVIDFGFR
SARDFAPERARGDNVYEAAAEHFKKLAKAGKRPLLAAYSKGSRQRIASILGEAGTELALA
ESWQEALGKSAKGKPTAMILPLDSGFASEDIELVTEQDLLGDRLVRRRKKRRDSDAFLSE
LQALSRGDLVVHTEHGIGKYLGLEPVTVGKSKHDCVMLQYKGGDKLYIPVENLEVLSRYG
SSEDAVMLDRLGGEAWQKRRAQLRERIREIASELMRTAAQRALKKAPVLEADHASYNQFV
DRFPWEETEDQERAIADVLGDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMGGQQVAV
VAPTTLLARQHFQHFSERFAGFPLKVGRLSRLVSAKESSETRDALADGTMDIVVGTHAIL
SKSTKFKDLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVIEWDDMVIREALLREHHRGGQSFIVVPRISDMDPLLDWLHEHVP
EVKVVPAHGQMSASEVEDRMSAFYEKKYDVLLSTTIVESGLDISSANTIIIHRADRFGLA
QLYQLRGRVGRAKLRAYAYLTTPADEALSEVAEKRLKVLSDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGEMGLEKPAEDFSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNQASDKAEIEGLAAEMIDRFGELPSATQNLVRLIEIKHQAIEAN
IAKIDVGARGTLVTFHKDDFPDPVGLLAYVDKRAEAVKLRPDMKLVVNRAWGDPQSRLNG
LFQLTKGLSAIAKRAAKKEKAPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctttcccgcatcctctccgccaaacaaccgctcaccttcgccaatcttgcg
cgggggagccagccgctggtgatggccgatctcgcccgcgcggcgcacaagcgcgcggtg
ttcgtcgcgccggacgacagcgcgatgcgcgcggtcgcggatgccgcgcgctatttcgcg
cccgagcttagcgtgatcgagttgcccgcttgggactgcctgccctacgaccgggcatct
cctgcgctgtcgatcagcacccagcgcctttccgcgctgcatcgtttgcaggcggaaaaa
ggcgcgccgcagctgctggtgaccaccgccaacgccgtggtccagcgcatgctcaccccg
ttccgcatccgcgaggcggtgcgcgagctgaagccgggcgtgcatatcgggcacgagagc
ctgacccagctgctgcagaagcagggttatagccgcacggacaccgtgatcgacgcgggc
gaattcgcggtgcgcgggtcgatcttcgacatcttcccctccggcctcgaacagggcctg
cggctcgatttcttcggtgacgagctggaaagcctgcgcctgttcgacccgaacacgcag
cgcaccacaggcacgctcgacagcttcctcctgctgcccgcgtccgaagttttgctcgaa
gacgcgacgatcaagcgtttccgcgcgggctatcgcgagcggttcggcgcgaacgccacg
caggacccgctttacgaagcggtcagcgaagggcggcggcaggccgggatggagcactgg
ctgcctctgttcgaggagaagctggcgaccctgttcgaccatctgggcaccagcgatccg
gtagtgatcgatgtcggcgctctggccgcgttcgaggagcggctgggcgacatcgccgaa
taccgccgcacccgcaccgaaaccgcgggccagaaggcgggcagctatcgcccgctcgac
ccgcaggcgctctatctcaccgaggacgagatcggcaccactctcgaaacacgcccggtc
caccgcgcgaccgggttcgacgagcccgagagcgacagcgtgatcgacttcggcttccgc
tctgcccgcgacttcgcgcccgagcgtgcgcgcggcgacaatgtgtacgaggcagcggcc
gagcacttcaagaagctcgccaaggcgggcaagcgcccgctgctcgccgcctattcgaag
ggtagccgccaacgcatcgcctcgatcctgggcgaagcgggcaccgaactcgcgctggcc
gaaagctggcaggaagcgctgggcaagtccgccaaaggcaagcccacggcgatgatcctc
ccgctcgacagcggcttcgcgagcgaggatatcgagctggtgaccgagcaggatctgctc
ggcgacaggctggtccgccgccgcaagaagcggcgcgattcggatgccttcctcagcgag
ctacaggcgctgtcgcgcggcgacctggtggttcacaccgaacacggcatcggcaaatat
ctcggcctcgaaccggtcaccgtgggcaagtccaagcacgactgcgtgatgttgcagtac
aagggcggcgacaagctctacatcccggtcgaaaacctcgaagtcctctcccgctacggc
agcagcgaggatgcggtgatgctcgaccggctgggcggcgaggcatggcagaaacgccgc
gcccagctgcgcgaacgcatccgcgagatcgccagcgaactgatgcgcaccgccgcgcag
cgcgcgctgaagaaggcgcccgtgctggaggccgatcatgccagctacaaccagttcgtc
gaccgcttcccctgggaagagaccgaggatcaggagcgcgcgatcgccgacgtgctgggc
gatctggaaagcggcaagccgatggaccgcctcgtctgcggcgatgtcggcttcggcaag
accgaggtcgcgctgcgcgccgccttcgtcgcggcgatgggcggccagcaggtcgcagtc
gtcgcgccgaccacgctgctcgcgcgccagcatttccagcatttcagcgaacgcttcgcc
ggtttcccgctcaaggtcgggcggctcagccggctcgtttcggccaaggaaagcagcgag
acgcgcgatgcgctggccgacggcacgatggacatcgtggtcggcacccacgcgatcctc
tccaagtcgaccaagttcaaggatctggggctcgtgatcgtcgacgaggaacagcgtttc
ggcgtgacccacaaggaaaagctgaagcagctgcgcgcggacgtgcacatgctcacgctg
accgccacgcccattccgcgcacgctgcagatggcgatgaccggcctgcgcgagctttcc
accatccagaccccgccggtggaccgccttgcggtgcggacttacgttatcgagtgggac
gatatggtgatccgcgaggcgctgctgcgcgaacatcatcgcggcggccagagcttcatc
gtggtgccgcgcatctccgacatggacccgctgctcgactggctgcacgagcatgtgccc
gaagtgaaggtggtgcccgcacatggccagatgagcgcgtcggaggtcgaggaccgaatg
agcgcgttttacgaaaagaaatacgacgtactgctgtcgaccacgatcgtcgaaagcggg
ctcgatatttcgagcgccaacacgatcatcatccaccgcgccgaccgcttcggcctcgcc
cagctataccagctgcgcgggcgcgtgggccgcgcgaagctgcgcgcctatgcctacctg
accacgcctgcggacgaggctctgtcggaggtcgcagagaagcggctgaaggtgctgagc
gatctcgattcgctgggcgcgggcttccagctcgccagccacgatctcgacattcgcggc
gcgggcaatctgctgggcgacgaacagtcgggccacatccgcgaggtcgggttcgaactc
taccagtcgatgctggaggacgcgatcctcgccgcgaaggcgggcgagatggggctcgag
aagcccgctgaggacttcagcccgcagatcacggtcgatgcgccgatcatgatccccgag
gattacgtgcccgacctcgccgtgcgcatggcgctctatcgccgcctcaaccaggcgagc
gacaaggccgagatcgaagggctggccgccgagatgatcgaccgcttcggcgaactaccc
tccgcgacgcagaacctcgtccgcctgatcgagatcaagcatcaggcgatcgaggcgaat
atcgccaagatcgacgtcggcgcgcgcggcacgctggtcaccttccacaaggacgatttc
cccgatccggtcggcctgctcgcctatgtcgacaagcgggccgaggcggtgaagctgcgg
ccggacatgaagctggtcgtcaaccgcgcctggggcgatccgcaaagccgcctcaacggt
ctgttccagctgaccaagggcctcagcgcgatcgccaaacgcgcggcgaagaaggagaaa
gcgccagcctag
DBGET
integrated database retrieval system
