Citromicrobium sp. JL477: WG74_11540
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Entry
WG74_11540 CDS
T04089
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cij
Citromicrobium sp. JL477
Pathway
cij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WG74_11540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cij03019
]
WG74_11540
Enzymes [BR:
cij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WG74_11540
Messenger RNA biogenesis [BR:
cij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WG74_11540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALG61394
LinkDB
All DBs
Position
complement(2370406..2371791)
Genome browser
AA seq
461 aa
AA seq
DB search
MTKFTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPS
IDRLREAENQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRN
KLHRGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKT
RQTLFFSATMPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLFMVQQDEKQSLLELIL
SGRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAK
TPVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQ
YLKDIRKTTDAEFERLPLPDNFRAVVEGVGPTKPAPKQQRGQRVTPRPIGDGARKPKAKH
PARKGKPQGAGQGRGGPGGENRGGQRRRNNRSGGARSGGQG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagttcacagacctcgggctgtcgcagcccgtactccaggccctcgacatgaag
ggctattccgagccgacgccgatccaggcgcaggccattccccccgttctcgaaggccgc
gacctgcttggtatcgcgcagaccggcaccggcaagaccgctgcgttcatgctgcccagc
atcgaccggctgcgcgaggccgaaaaccagaccccgttcaagtcgtgccgcatgctggtg
ctggcaccgacgcgtgaactggccgggcagatcgcccagagcgccaaggattacggcgcg
ctcgcgggcctcaaggtgcagtcgatcgtaggcggcacctcggtcaacaaggaccgcaac
aagctgcaccgcgggaccgacatcctcgtcgcgacgccgggccgcctgctcgacctgatc
gaccagcgcgccttcaccctcgacaaggtcgagatcctggtgctcgacgaagcggaccag
atgctggacctcggcttcatccacgcgctgcgcaagatcaacgaactgacgcccaagacg
cgccagacgctgttcttcagtgccacgatgcccaaggcgatcaaggatctggtcagccag
tattgccgtaacccggcgcaggtttcggtcacgcccgaaagcaccacggcggagcggatc
gagcagttcctgttcatggtccagcaggacgagaagcagagcctgctcgaactgatcctg
tcgggccgccatgaaatccctggcaagctcgagcgtgtcctcgtcttcgcgcgcaccaag
catggctgcgaccgtgtggtgaagaagctggcgcaggtcggcatccccgccaacgcgatc
cacggcaacaagagccagccgcagcgcgaacgcgcgctcgacgagttcaagcgtgccaag
actccggttcttgtggcgaccgatgtcgccgcgcgcgggatcgacattccgggcgtgtcc
cacgtcatcaactacgaactgcccaacgtgccggaacagtatgtccaccgcatcggtcgc
accgcgcgtgcgggtgccgatggcatcgccatcgcgttctgcgccgaggacgagcgccag
tatctcaaggatatccgcaagacgaccgacgccgagttcgagcgtctgccgctgccggac
aatttccgcgcggtggtcgaaggcgtcggcccgaccaagcctgcgcccaagcagcagcgc
ggccagcgcgtgacgccccgtccgatcggcgacggcgcgcgcaagcccaaggccaagcat
cccgcacgcaagggcaagccgcagggcgccggccagggccgtggcggtccgggtggcgag
aaccgtggtggccagcgccgccgcaacaaccgttcgggcggagcacgctcgggcgggcag
ggctaa
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