Corynebacterium incognita: H0194_09390
Help
Entry
H0194_09390 CDS
T09952
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cik
Corynebacterium incognita
Pathway
cik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H0194_09390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cik03400
]
H0194_09390 (mfd)
Enzymes [BR:
cik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H0194_09390 (mfd)
DNA repair and recombination proteins [BR:
cik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H0194_09390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QNE90609
UniProt:
A0A7G7CSP3
LinkDB
All DBs
Position
2014328..2018005
Genome browser
AA seq
1225 aa
AA seq
DB search
MLAGLLNIAATDPKLKGLLANVGEPELHITGIDQARPWAIGALAQRAPVLVVTATGREAE
DLTAELQAMVGDKAAFFPSWETLPHERLSPGVDIVGRRAQVLERLERDDVRVIVTAARGV
AQPLLREVPGREPVVVREGGEYDFTELVEGLNFRGYKHVDMVAKRGEFATRGGIVDVFPT
AMDYPVRVELWGDEVTDIRQFSVADQRAIVEVAISEVRCHPARELPITDSVAARAAELTT
KHPGNAALVELLTKVAEKIPADGMEALLPVLADSQLVMLTEFLPADAHVLLVAPEKIRRR
IDDLVTTDTEFLEAGWEAAAMGADGPLAVEGLDVEASSYRSYDALEVGVRKSGHPWWTFA
PPGMMQGDEDKSLPLEFEPGPTPRGDLKEIEVMMAQLLAHTTAGGRAAFIAPNQGAIKRM
VERFAEQGIRAKVATPAWEPSPGEVTLYQALSHAGLVFPKVRKLKDADALPLVVITETDL
TGNRVSDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMAERTIQAGDETSRR
EYVVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGESPTLSKMGGSDWKNTKKKARAAVR
EIAGELVELYAKRQSAPGHAFASDTPWQAEMEDNFPFVETEDQMLAIDAVKQDMESTVPM
DRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHFDTFSERMQGFPVNIRV
LSRFTSTKDAKEILHGLADGTVDVVVGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHI
KALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAI
RRELLRDGQTFFIHNKVADIEKKARELRDLVPEARIVVAHGQMSEDLLEKTVQGFWDREY
DVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATL
TETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEA
VETFKALASGQPLDATDQGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAESKDNKDL
QLVIEEMEDRYGPVPEEVSRLLAVSRLRHQARRAKVSDITVQGTRIKVHPVDMPDSKQIR
LKRLYPGSNYRAAAKAIQLSFPKAGRTLTSPKLRDVELLQWMADFLADMFDIEPTNVDGS
KREPAQAEAGAQPKKGGGGVFSFSE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgggcctgctcaacattgccgccactgatccgaagcttaaaggcttgctcgcc
aacgtgggcgagccggagctgcacatcaccggcatcgaccaggcgcggccgtgggcgatt
ggtgcgctggcacagcgtgcgcccgtcctagtggtgaccgccaccgggcgcgaggccgag
gatctcaccgcggagctccaagccatggtgggcgacaaggccgcgttcttcccctcgtgg
gagacgttgccgcacgagcggctgagccccggcgtagacatcgtgggccgccgtgcgcag
gtgcttgagcgcctggagcgtgacgacgtccgcgtcatcgtcaccgccgcgcgcggtgtc
gcgcaaccgctattgcgcgaggtgccgggccgtgagccggtcgtcgtccgcgaaggcggg
gagtacgacttcaccgagctcgtagaagggctaaatttccgcggctacaagcacgtggac
atggttgccaaacgcggcgagtttgccacccgcggcggcatcgtggacgtttttcccacc
gccatggactatccggtccgcgtggagttgtggggcgacgaggtcactgacattcgtcag
ttctccgtcgccgaccaacgtgccattgtggaggttgccatctcggaggtgcgctgccac
ccggcacgcgagctccccatcactgattccgtggccgcccgcgccgcggaattgaccacc
aaacacccgggcaacgcggcgcttgtggagctgctcaccaaggttgcggagaagatccct
gctgacggcatggaggcgctgctgccggtccttgcggattcccagttggtgatgctcacc
gagttcttgcctgccgacgcccacgtgctcctcgtcgccccggaaaagatccggcgccgc
atcgacgacctcgtgaccaccgacaccgagttcttggaggccggctgggaggccgccgcc
atgggggcggacggtccgcttgccgtcgagggccttgacgtggaggcgtcgagctaccgc
tcctatgacgccctcgaagtaggcgtccgcaagtccgggcatccctggtggaccttcgca
ccgcccggcatgatgcagggtgacgaggacaagtccctgccgcttgagttcgagcccggc
cccaccccgcgcggtgatctcaaggagattgaggtcatgatggcccagctcctggcgcac
accacggcgggcgggcgcgcagcgttcatcgcccctaaccagggcgccatcaagcgcatg
gtggaacgctttgctgagcaggggatccgcgctaaggtggccaccccggcctgggagcct
tcgcctggcgaggtcaccttgtaccaggcgttgagccacgcgggcttggtttttccgaag
gtccgcaagctgaaagacgccgacgctctgccgctcgtggtcatcaccgaaaccgatctc
accggcaaccgtgtctcagacatcgcgggcgctaaacgccgccccgccaagcgccgcaac
cgggtggatccgctcgcgctcaaaaccggtgacttcgtggtgcacgaaacccatggcatc
gggcgcttcctcaagatggcggagcgcaccatccaggcaggtgatgagacgtcgcggcgc
gaatacgtggtgctcgaatacgccgctagcaagcgcggccagcccgccgaccagctctgg
gttcccatggattcgttggacttgctgtccaagtacaccggcggcgagtccccgacgctg
tccaagatgggcggctcggactggaagaacaccaagaagaaggcgcgcgccgccgtgcgc
gaaatcgccggcgaactcgtggagctctacgccaagcggcagtccgcgccggggcacgcc
ttcgcctccgatactccgtggcaggcggagatggaggacaacttccccttcgtcgagacc
gaggaccaaatgctggccatcgacgcggtgaaacaagacatggagtccaccgttcccatg
gaccgcgtcgtggttggcgacgtcggctacggcaagaccgaagtggcggtgcgcgcggcc
ttcaaggcagtgcaggacggcatgcaagtggccgtgctggtgcccaccaccttgctggca
cagcaacactttgacacgtttagcgagcgcatgcagggattccccgtcaacatccgggtg
ctctcgcgctttacatccacgaaggatgccaaggagatccttcacggtctggcagacggc
acggtagacgtcgtcgtcggcacgcaccgtctcctccaaaccggggtgcagtggaagaac
ctgggcctcatcgtggtggatgaggagcagcgcttcggcgtggagcacaaggagcacatc
aaggcactgaaggcctcagtggacgtgctcaccatgtcggcgactccgatcccccgtacc
ttggagatgtccatggcgggtatccgcgagatgtccaccatcctcaccccaccggaggac
cgccaccccgtgctgacgtacgtcggcgcctacgaggacaagcaggtggccgccgcgatt
cggcgcgagctgctccgcgatggccaaaccttcttcatccacaacaaggtggcggatatt
gagaagaaggcccgcgaactgcgcgacctggtaccggaggcccgcatcgtggtggcgcac
ggtcagatgagcgaggacttgctggaaaagaccgtccagggattctgggaccgcgaatac
gacgtgttggtctgcaccaccatcgtagaaaccggtctggacatcgccaacgccaacaca
ctcatcgtcgaaaacgcccaccacatgggcctgtctcagctgcaccagctgcgcgggcgc
gtgggccgttcccgcgagcgcggctacgcctacttcctgtacccgaagggggcgacgctc
acagagacctcctacgaccgcctggcgacgatcgcgcagaacaatgatttgggcgccggc
atggccgtggcaatgaaggacctggagatgcgcggcgccggcaacgtgctgggtgcgcag
cagtccggccacatcgccggtgtgggttttgatttgtacgttcgcctggtgggggaggcc
gtggagaccttcaaggcgctcgcctccggtcaacctttggacgccacggatcaggggccg
aaggagattcgcatcgacctaccggtggatgcgcacattccggaaagctacatcaactcg
gagcgcctgcgcctggaggtctaccgcaagctcgcggaatccaaggacaacaaggacctg
cagctggtcatcgaggagatggaggaccgctacggacccgttccggaggaagtctcgcgc
ctgctcgcggtgtcgcgcctgcgccaccaggcgcgccgcgcgaaggtctccgacatcacg
gtgcaaggtacgcgcatcaaggttcacccggtggatatgccggattccaagcagattcgc
ctcaagcgtctctacccggggtccaattaccgcgctgccgcgaaggccatccagctgagt
ttcccgaaggccgggcgcacactgacctcgccgaagcttcgcgacgtcgagttgctgcag
tggatggcggacttcctggcggacatgttcgacatcgagcccaccaacgtcgacggttcc
aagcgtgagcccgcgcaggcggaggcaggcgctcagccaaagaagggtggcgggggagtg
ttttccttcagtgagtag
DBGET
integrated database retrieval system
