Chryseobacterium indoltheticum: EG358_01455
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Entry
EG358_01455 CDS
T06757
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cil
Chryseobacterium indoltheticum
Pathway
cil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG358_01455 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cil03019
]
EG358_01455 (rnr)
03016 Transfer RNA biogenesis [BR:
cil03016
]
EG358_01455 (rnr)
Enzymes [BR:
cil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EG358_01455 (rnr)
Messenger RNA biogenesis [BR:
cil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EG358_01455 (rnr)
Transfer RNA biogenesis [BR:
cil03016
]
Prokaryotic type
tRNA degradation factors
EG358_01455 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AZA72503
UniProt:
A0A381F6I2
LinkDB
All DBs
Position
complement(294853..297003)
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AA seq
716 aa
AA seq
DB search
MPKKKKYISQKNDHKLMEIGRLIMKFMNQNQTKIYNYKQISDGIDHKNPRQREMVIQALH
KLLSSQRIKETEKGKYSINLNIEGTLTGTIDFNQSGNAYVTVENLKDDVFIHSKNVKDAL
QGDKVLIVTYNFKGKKLEGSVLEVLERKRSEFVGTFQLVPHKEFGFVVCDKKTINTDIFI
PKGKINGAENGNKVVVKMTEWKAGDKNPEGEILQVLGNPGDHETEIHSILAEYGLPYEFP
EEVERDADKIDRTITDEEAAKRWDMRDVLTFTIDPKDAKDFDDALSMRKLENGNWEVGVH
IADVSHYVVPGTILDDEAYERATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFE
LNDKAEIQKEWFGRTVIHSDRRFTYEEAQERIETKEGDLQEEINVLDGLAKIMRAARIKN
GAITFDRSEVRFNLDENNQPIGVYFKISKDSNHLIEEFMLLANKKVSEFVSLKKGQPNNN
TFIYRIHDDPDPAKLEALRDFVSTFGYKMDLANTKKVAESLNTLLKDVKGKGEENMIETL
AMRSMSKAVYSTDPIGHYGLGFDYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPDRNELE
EKAKHCSAMERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAEG
LIKLRDLMDDSYTYDKATHAVYGSRTGNRYQLGDNVQIKVVKANLIQKQLDFKIVE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaagaaaaaatatataagtcagaaaaatgatcacaaattaatggaaatcgga
agattgatcatgaaatttatgaatcaaaatcaaactaaaatctacaattacaaacaaatc
tcagacggaatagatcataaaaatccaagacagcgtgagatggttatacaggctttgcac
aaacttttgtcaagccaaagaattaaagaaaccgaaaaaggaaaatacagcatcaatctt
aatatcgaaggtactttaacgggaacgatagatttcaaccaaagcggaaatgcttatgtt
accgtagaaaatcttaaagatgatgtctttattcattcaaaaaatgtgaaagacgctttg
cagggtgataaagttttaattgttacctataattttaaaggtaaaaaattagaaggctct
gttttagaagttctggagagaaaaagatcagaatttgtaggtacttttcaattggttcca
cataaagaattcggatttgtagtttgcgataaaaaaaccattaacactgatatttttatt
ccgaaaggaaaaataaacggtgcagaaaacggtaataaagtcgttgtaaaaatgaccgaa
tggaaagcgggagacaaaaatcctgaaggtgaaattttacaggttttaggaaatcccgga
gatcatgaaacggagattcactctattcttgcagaatacggtttaccttacgaattccct
gaagaagtggaaagagatgccgataaaatagaccgaacaataactgatgaagaagctgca
aaacgttgggatatgcgtgatgttttaacgtttaccattgacccgaaagatgcaaaagat
tttgatgatgccttatcgatgcgcaagcttgaaaacggaaattgggaagtcggtgttcac
attgctgatgtttcacattatgtggttccgggaactattttggatgatgaagcgtacgaa
agagcgacttctgtttacctggtagaccgtgttgtaccgatgcttccggaagttttgagt
aatgatgtttgttcgcttcgtccgaatgaagataaatatactttttctgccgtttttgaa
ttgaatgacaaagcagagatccaaaaagaatggtttggaagaacggtcattcactctgac
agaagattcacctatgaagaagctcaggaaagaattgagaccaaagaaggcgatttgcag
gaagagatcaatgttttagatggtctggctaagatcatgcgtgcagctcgtatcaaaaac
ggtgcaattacatttgacagaagtgaggttcgatttaatttagatgaaaataatcagccg
attggagtttattttaaaatcagtaaagattctaatcacctgatcgaggagtttatgttg
ctggccaataaaaaagtttcagaatttgtttcgttgaaaaaaggtcagccaaataataat
acattcatctacagaattcacgatgatccggatcctgcaaaactggaagctttaagagat
ttcgtttctacttttggatataaaatggatcttgccaataccaaaaaagtagcagaatct
ttaaatactttactgaaagatgtaaaaggaaaaggcgaagaaaatatgatcgaaaccttg
gcgatgcgaagtatgagtaaagccgtttattctacagatcctatcggtcactacggctta
ggatttgattattattcgcacttcacctctcctattcgtcgttatcccgatttgctggcg
cacagattgttgcagcattatttagacggaggcaaatctcccgacagaaatgagctggaa
gaaaaggcaaaacactgcagtgcaatggagcgtttggcagccgatgcagaaagagattct
atcaaatttatgcaggtaaaattcatggaaaaacatttaggagaaactttcacaggagtt
atttccggagttgcagaatttggtttctgggtagaaattcctgaaaacggtgcagaaggt
ttaattaagcttcgcgatttgatggatgattcttatacttacgacaaagcgacacacgca
gtgtacggatctcgtaccggaaacagatatcaattgggtgataatgttcagattaaagtg
gtaaaagctaatttgattcagaaacaactcgattttaaaattgttgaataa
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