Chryseobacterium indoltheticum: EG358_02965
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Entry
EG358_02965 CDS
T06757
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cil
Chryseobacterium indoltheticum
Pathway
cil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG358_02965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cil03400
]
EG358_02965 (mfd)
Enzymes [BR:
cil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG358_02965 (mfd)
DNA repair and recombination proteins [BR:
cil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG358_02965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Latarcin
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AZA72782
UniProt:
A0A381F734
LinkDB
All DBs
Position
628676..632038
Genome browser
AA seq
1120 aa
AA seq
DB search
MQLKNISEKFLPDLLKNEFGKEIFTQIDTQPHLSVRGSAGSSASVFAAELFLTHKKTVLF
LVDDKEEALYINSEMEDLLGKESVLYFPATHMEPYQVEKTQNANLVLRTEVLNKINSEKS
PKVIVAYIGALSEKVLKKEDFKAISHHIKTGDQLDFDFVDELLNHYQFNQTDFVSEPGEF
SVRGGIVDVFSYSNEKPYRITFFGNEVENIKTFDIETQLSVDKVEGFQLVSNMNFSVSGT
RVSFLEILPKDSLVISRNGIVGLQKLRTFYEKSLEKFDNLNKDIAHRSPQELFISDQEFL
FDYKKFKTIDFSSVGIEEIKSLEIKLNQTAQPSFHKNFQLLIEDLQEKKEEGFDIWISFS
TEKQKDRLVSIFDELGHQLAFKSFKSELHEGFVDPDHKILVYTDHQIFDRYQRYKSKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVSI
HSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKARVKQIAFDLIKLYAERKTAKGFQY
SPDSYLQNELEASFAYEDTPDQEKATLDVKKDMEDEGVMDRLICGDVGFGKTEVAIRAAF
KAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTAKQKNETLQGLDDGK
IDIVIGTHQLAADKVKFKNLGLLIIDEEHKFGVSVKDKLKTMKTNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTNIIGFSEEIIRDAVSYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITAHGQMEGKQMEQNVLDFMDGKYDVLVATTIIESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKMMQEALEELKDDEDFENLFENEEDRN
KLFKSVKEVNIDTDLELMLPDSYVSSTEERLLLYQKLADIDNEKDLQKFESELKDRFGNL
PSEAVNLLKSVALKWLAAEIGFEKIVMKNGIFLGYFPGNPQDKFYQTDKFRHIISYLTQN
PAQAQLKEKAGKEGNNLMMRKDKVKNVDEVNVLLKSILGI
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaatatcagcgaaaaatttcttcccgatttactaaagaatgaattcgga
aaggaaattttcacacaaattgatacgcagccgcatctttctgtaagaggaagtgcaggt
tcttcagcttcggtttttgctgccgagctatttcttactcacaaaaaaacggttcttttt
cttgttgatgacaaagaagaagcgttgtacatcaacagcgaaatggaagatttgctggga
aaagaaagtgtactttattttcctgccactcacatggagccttatcaggttgaaaaaact
cagaatgccaatttggtattgcgaacggaggttttaaataaaataaattcagaaaaatct
ccaaaagttatcgtggcttatattggcgctttgtctgaaaaagtattgaagaaggaagat
tttaaagccatttctcatcatattaaaaccggcgatcagctcgactttgattttgtggat
gaattgctgaatcattatcaattcaaccaaactgattttgtttccgaaccgggagaattt
tctgtacgtggtggaattgtcgacgtcttttcttattccaacgaaaaaccttatcgtatt
actttcttcggaaacgaagtggagaatattaaaacttttgatatagaaactcagctttcg
gttgataaagtagaaggttttcaattggtgtctaatatgaatttttcagtttcgggaaca
agagtttcttttcttgaaattttgcctaaagacagtttggttatttcaagaaacggaatt
gttggccttcagaagctgagaacattttacgaaaaatctttagaaaaatttgataattta
aataaggatattgcacacagaagtccacaggaattatttatttctgaccaggaatttttg
tttgattataaaaaatttaaaaccatagattttagcagtgtcggaatcgaagaaataaaa
tctcttgaaataaagctcaatcaaactgctcaaccttcgtttcacaagaattttcagtta
ttgattgaagatttgcaggagaaaaaagaagaaggttttgatatctggatctctttttcc
acagaaaaacaaaaagacagattggtgtctatctttgatgaattgggacatcagctggct
tttaaaagttttaaatctgaacttcatgaaggtttcgtagatcctgatcataaaattttg
gtctataccgatcatcagatttttgaccgttaccaaagatataaatctaaaaatacattt
gctaaatctgagcagttaacgctgaaagatctgatgtcgctgaaagtcggagattatatt
gcccacatcgatcacgggataggaaaatttatgggattggtaaaagtaaacaatgatgga
aagattcaggaatgttttaaattgacttataaaaatggagatttgctttatgtaagtatt
cattcgcttcataaaatttctaaatacaatggtcccgacggaaaagagattgttctaagc
aagctcggttctcctgcctggaaatcattaaaacaaaaaaccaaagcgagagttaagcaa
attgcttttgacttaatcaaattatatgcggaaagaaaaaccgcaaaaggattccaatat
tcaccagattcttatcttcaaaatgagttggaagcaagttttgcttatgaagatactccc
gatcaggaaaaagcaacattggatgtcaaaaaagatatggaagatgaaggagtgatggat
cgcttgatttgtggtgatgtgggttttggaaaaacagaagttgccattcgtgctgcgttt
aaagcggctacagatggtaagcaggttgcaattttggttccaacgaccatcctggctttt
caacattacagaagtttcaaagaaagattgaaagatttcccagtgaacatttcgtactta
aaccgtttcagaacggcgaaacaaaaaaatgaaactttacagggattagacgatgggaaa
attgacatcgttatcgggacacatcagttggctgcagataaagttaaatttaaaaattta
ggtttactgattattgatgaagagcataaatttggagtttcggtaaaagataaactcaaa
acgatgaaaaccaatgttgataccttgacattgactgcaacgccaattccgagaacattg
caattttctctgatggctgcacgagatctttcggtgataaaaaccccaccgccaaacaga
cagccggttgatacaaatattattgggtttagcgaagaaattattcgtgatgcggtttct
tatgaattgcagcgtgacgggcaggtttatttcatcaataatagaattgaaaacctgaaa
gatattgcaggcttgatccaaagattggttcccgacgctagagttattaccgcacacgga
caaatggaagggaagcaaatggaacagaatgtcctcgattttatggatggaaaatatgat
gttttggttgcaactacgattattgaaagtggagtagatgttccgaatgcgaatacaatt
ttcattaatgatgcgcaacgtttcggaatggcagaccttcatcagatgagaggaagagtt
gggcgaagcaacagaaaagcattttgttacctgattacgccgccttttgatatgatgacg
tctgatgccagaaaaagactggaagcaattgaacagttttcagatctgggaagtggtttt
cagattgcgatgaaagatttggaaattcgtggtgccggagatttattgggcggtgaacaa
agcggatttatcaatgaaatggggttcgaaacctatcagaagatgatgcaggaagcactt
gaagaactgaaagatgatgaagattttgaaaatctttttgaaaatgaagaagaccggaat
aaacttttcaaatcggtaaaagaggtcaatatcgatactgatctggagctgatgcttccg
gattcttatgtttcgagtaccgaagaaaggcttttgctgtatcagaaattagctgatata
gataatgaaaaagatcttcagaaatttgaatctgaactgaaagaccgttttgggaatttg
ccaagtgaagctgttaacttactgaaaagtgttgcactaaaatggttggccgccgaaatt
ggtttcgagaaaattgtaatgaaaaacggaattttcttaggctacttcccaggaaatccg
caggataaattttatcagaccgataaattcaggcatattatttcttacctcacgcaaaat
ccagcgcaagctcagctaaaagaaaaagcagggaaagaaggaaataatctgatgatgcga
aaagataaagtaaagaatgtagatgaggtgaatgttttgctgaaatctattttaggaatt
taa
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