Chryseobacterium indoltheticum: EG358_18830
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Entry
EG358_18830 CDS
T06757
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cil
Chryseobacterium indoltheticum
Brite
KEGG Orthology (KO) [BR:
cil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cil03009
]
EG358_18830 (rlmD)
Enzymes [BR:
cil01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EG358_18830 (rlmD)
Ribosome biogenesis [BR:
cil03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EG358_18830 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
N6_N4_Mtase
MTS
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_4
PCMT
RrnaAD
PrmA
UPF0020
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
AZA75666
UniProt:
A0A381JSW7
LinkDB
All DBs
Position
complement(4066061..4067467)
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AA seq
468 aa
AA seq
DB search
MRKKKDVILENIKLFAAGAKGVAIGKTEEGKTVLVSGAIPGDVVNARVKKSKSKYFEAEV
KEIVERSPFRVEPKCIHFGTCGGCKWQNMSYEKQLDFKQEEVYNNIKRIGGIDDFETVPI
LGAEEQYFYRNKMEFSFSNARWLSQYEISSEENFGSRDALGFHIPGMWSKILDLKECFLQ
EDPSNAIRLAVKKFAENKGLDFFDVKSQKGFLRTLMMRQNSKGEWMVLFQLYREEKENRT
QLFDYLLEQFPQIKTLVYAINPKQNDSIYDLNVNVYFGDGFLMEEMDGLKFKIGPKSFFQ
TNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKHVIGIESVQEAIDAAI
EHAELNGLTNTTFYCGDMKNVFNDEFLENHPKADVLITDPPRDGMHQKVVEQILKLAPEK
VVYVSCNSATQARDLALMKEHYTLVKILPVDMFPQTHHVENIALLIKK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaagaaagacgtaattcttgagaatataaagctttttgcagcgggtgcaaaa
ggagttgcgataggaaagactgaagaaggaaaaactgttttggtttccggagcaattccc
ggagatgtggtgaatgcaagagtgaaaaagtcaaaatcaaaatattttgaggctgaagta
aaagaaattgttgaaagatcaccattcagagtggaaccgaagtgtattcatttcggaact
tgtggcggttgcaaatggcagaatatgagctacgaaaagcagcttgattttaaacaagaa
gaagtttacaataatattaaaagaattggcggaatcgatgattttgaaaccgttccgatt
ttgggtgcagaagaacagtatttctacagaaataagatggaattttctttctctaacgca
agatggctaagccaatatgagattagttctgaagaaaatttcggaagcagagatgcgcta
ggattccatattccgggaatgtggagcaaaattttagacttaaaagaatgtttccttcag
gaagatccatcgaatgcgattcgtttagcagtaaagaaattcgctgagaataaaggttta
gatttcttcgatgtgaaaagtcagaaagggttcctgagaactttgatgatgagacaaaat
tcaaaaggagaatggatggttttattccagctttacagagaagaaaaagaaaatcgcacg
cagctttttgattatttacttgagcaattcccacaaataaaaacgttggtgtatgccatc
aatcctaaacaaaatgattcaatctacgatttgaatgttaatgtttactttggagacgga
tttttaatggaagaaatggatggtttgaaatttaaaatcggtccgaaatctttcttccag
acaaattataagcaagctttagaattatacagaaaaaccctcgaatttgctgatttaaaa
ggtgatgaagtggtttacgatttatatacaggaaccggaacaatcgctcagtatgttgcc
agaaatgcaaaacatgtgattggtatcgagtctgtacaggaagcaattgatgccgcaatc
gaacatgcagaattgaacggcttaaccaatacgacgttctattgtggtgatatgaaaaac
gtttttaatgacgagtttttagagaaccatccaaaagctgatgtattgattaccgaccca
ccaagagacggaatgcaccagaaagttgttgaacagatcttaaaattggctcctgaaaaa
gtagtgtatgtaagctgtaattctgcaacgcaggctagagatttggctttaatgaaagag
cattataccttggtgaagattttaccggtagatatgttcccgcaaacgcatcatgttgaa
aacattgcgttattaataaagaaataa
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