Carya illinoinensis (pecan): 122275063
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Entry
122275063 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122275063
03015 mRNA surveillance pathway
122275063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275063
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122275063
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122275063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdhD
Motif
Other DBs
NCBI-GeneID:
122275063
NCBI-ProteinID:
XP_042939938
LinkDB
All DBs
Position
9:complement(689037..694339)
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AA seq
494 aa
AA seq
DB search
MADATSDATKSLPENKPPNLESKRWADEVDDPPEESSASSISGDKAASELKVEALTINDE
ESKINKFLDEPQDSNITAVTTGDTPYTSAASFEDLSLTPELLKGLYVEMKFQKPSKIQAI
SLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRIDPNLKAPQALCVCPTRELAIQNLEV
LRKMGTYTGISSECAIPMDSKNYVPIAKQPPVSAQVVIGTPGTIKKWMSNRKLGVGNVRI
LVFDEADHMLAEDGFKDDSLRIKKDIERASSHCQVLLFSATFNETVKNFVSRIVKDYNQL
FVKKEDLSLESVKQYKVHCPDERAKTLVIKDRIFELGENLGQTIIFVRTRHSAGILHKAL
VDLGYAVTTIQGAVSPEDRDKIVQEFKNNLTKVLISTDLLARGFDQQQVNLVINYDLPVK
HETPSEPDYEVYLHRIGRAGRFGRKGAVFNLLCGDRDEMLMSKIEHYFGSQVTQVERWDS
EEEFKNALKAAGLL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccacctccgatgcgacaaaatcgcttcctgagaacaaacctccaaacttg
gaatcgaagcgatgggccgatgaagtggacgatcctccagaggaatcgagcgcttcttcg
atttccggggacaaagccgcttcggagctcaaggtagaggcattgaccataaacgatgaa
gaaagcaagatcaacaagttcctcgatgaaccccaagactccaacatcaccgcggttact
acgggtgatacaccctacacatctgcagcttcttttgaggatttgagtttgacaccagag
ctgttgaagggcttgtacgtggagatgaaatttcagaagcctagtaaaatccaagcgatc
agcttgccaatgattttaactcctccgtacaaagatttgatagctcaagcacataatggc
tctggtaagactacttgttttgtgcttgggatgttgagtcgcattgatccgaatctgaag
gctcctcaggcactttgtgtctgtcctactagagagttggctattcagaatttggaagtt
cttaggaagatggggacgtacacaggtataagttcggagtgtgccattccaatggacagc
aaaaattatgtgccaatagcaaaacaaccacctgtatcagcacaagtagtcattggaact
cctggtacaatcaagaagtggatgtcgaatagaaaattgggcgttggcaatgtcaggatt
cttgtttttgatgaagctgatcacatgctagctgaggatggatttaaagatgattccttg
agaataaagaaggatattgaaagagccagttctcactgccaggttcttctgttttctgcc
acatttaatgaaaccgtaaaaaatttcgtatcaaggattgtcaaagattacaatcaactt
tttgtcaagaaagaagatctatctttagagtctgtaaagcagtacaaggtgcattgtccg
gacgaacgtgccaagactctagtaattaaggacagaatattcgaattgggagagaacttg
gggcagacaataatatttgtacgcacgagacatagtgccggcatactgcataaggcactt
gttgaccttggttatgcagttactaccattcaaggtgctgtcagtccagaagacagagac
aagatagttcaagagttcaagaataacctaactaaagttcttatatcaactgaccttctt
gcccgaggctttgaccagcaacaggttaatctggttatcaactatgatcttccggtgaaa
catgaaacgccatcagaaccagattatgaggtgtacttgcataggattggtagggcaggg
agatttggccgcaagggagccgtctttaacttgctttgtggtgatagggacgagatgctc
atgtcaaaaattgagcattattttggtagccaagtcacacaggttgagaggtgggatagc
gaagaagagttcaaaaatgccctcaaggcagcaggattgttgtga
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