Carya illinoinensis (pecan): 122275282
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Entry
122275282 CDS
T08745
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122275282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122275282
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122275282
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
HECT type E3
122275282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Adaptin_N
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
122275282
NCBI-ProteinID:
XP_042940206
LinkDB
All DBs
Position
9:complement(35540110..35548855)
Genome browser
AA seq
1529 aa
AA seq
DB search
MGNRGQKRAEMVDELPADKRACSSLDFRPSSSNSSVQTHMNSPNSAHETRDNDMETSSSA
SASSRSEGEPERDSAYGSCDSDDAEQRHSNLRHYRDYQRQRSSTDHGKFKRILSSLSEES
GPSEQLASLTELCEVLSFCTQDSLSSMVSDSLSPLLVNLAKHESNPDIMLLAIRAITYIC
DVYPRSSNFLIRHDAVPALCQRLLAIEYLDVAEQCLQALEKISREQPLACLQAGAIMAVL
NYIDFFSTSVQRVALSTVVNVCKKLPSECPSSFMKAIPILCNLLQYEDRQLVEYVAICLI
KIVERVSQSSELLDELCQHRLIDQVIHLIDLNCRTTISRPIYNGLIGLLVKLSSGSIVAI
RTLYELKISSILKDILSTYDLSHGMSSPHMVDGHCDQVYEVLKLLNELLPSTARDQDAQQ
VLDKESFLVNSPSLLQKFGMDILPLLIQVVNSGANLYVCYGCLSVINKLVYFSKSDMLLE
LLKNTNISSFLAGVFTRKDQHVLLVALHIAEMILQKLSDIFLSSFIKEGVLFAIDALSVQ
ENCAQLMFPKFTAVQLSFDSSQKSASKEVPSCLCYAFATGQPPTTSETGSCKLENDSVHK
LAKHVKTNYFTPNLSEQGVTDILQKLRTCSTALSDLVNATIGNDAPARYEERFYCIVHQI
METLNGKEPISTFEFIESGVVRSLLSYLSNGQYLREKGKAQGVNGNFIIVEKRFEMFARL
FLSSSEPYSVDLPLLVLIRKLQSALSSLENFPVILSHGSKQRYSYAMVPIGRRTMHPCLK
VRFVRGEGETYLGEYSGDVQTVDPFSSLDGIEGFLWPKVSIGRNEHIKSASCTTGKTESL
PHDLPSTDNDANLSQSAFEQALNDFAKQEMQLPLEAEVNMGVQHPASCSDEDALQKLVFY
LEGQQLDHTLTLYQAILQKQIKENEFITGAKLWSQVYTLTYKRALEPIQGNSQECLQSGQ
NLSVSDKVGAYMEYTPFVSSIYACELTSDLERSSSTYDVLFLLKSMESLHRFTFHLMSRE
RICAFAEGKIDDLDSLKVGVPSMPQNEFVNSKLTEKLEQQMRDSLSVSIGGMPSWCKQLV
ASCPFLFSFEVRCKYFQLAAFGQLQSQSHQLSHSNSGATSDRRPSTGSLPRKKFLVFRDQ
ILESAAKIMDLHARYKMPVEIEYDQEVGTGLGPTLEFYTLVSCEFQKSGLGMWRGEYGLF
ASSTTLEAEDKGILMSPSGLFPRPWPSTLSTSDDQFSEVIKKFVLLGQVAAKSLQDGRVL
DLHFSKAFYKIILGRELTLYDIQSFDPELSRTLLEFQALVNRKRFLESVNGENSPAEFDS
FFRDTRIEDLCLDFTLPGYPNYVLASGPDYKMVNMRNLEDYVSLIVDATINSGISRQAEA
FKSGFNQVFPMEHLQIFTEDELEHLLCGEHDSLVFNELLDHVKFDHGYTASSLPIVNLLE
IIQEFDHGQRRAFLQFVTGAPRLPPGGLASLNPKLTVVRKHSSIWADTDLPSVMTCANYL
KLPAYSSKERMKERLLYAITEGQGSFHLS
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatcgtggccaaaagcgtgctgaaatggttgatgaattgccggcggataagcgg
gcatgcagttcgttggatttcagaccgagttcatcgaattcatcggttcagacccatatg
aactcccccaattcagcacatgaaacccgcgacaatgacatggaaacttcgtcatctgct
tcagcctcaagccgatcggaaggagaacctgaaagggattcagcgtatggttcttgtgat
tctgatgatgcggagcaaagacatagcaatcttcgccactatcgtgattatcagaggcag
agatcgtccactgatcatggaaaattcaagagaattttatcaagtttgagtgaagaaagt
ggcccttccgaacaactggcttcacttactgagttatgtgaagtgttgtcattttgtaca
caggattcactttcaagcatggtgtcagactctttgtctccgcttcttgtaaaccttgca
aagcacgagagtaacccagatataatgttactagctataagagctataacatatatatgc
gatgtgtatcctcgatcatcaaatttcctaattcgtcatgatgcggttcctgctctttgt
caaagattattggctattgagtacttggatgttgctgaacagtgtctgcaagcgttggag
aagatatcacgggagcaaccgcttgcttgcttacaggctggggcaattatggctgtccta
aattatattgacttcttttcaacaagtgtacagagagttgctctttccactgtggtgaac
gtctgcaagaaacttccctctgaatgcccttcatctttcatgaaagctattcccatattg
tgcaatcttcttcagtatgaagatagacagcttgttgaatatgttgctatctgcttgatt
aaaatagtggagcgagtaagtcagtcttctgagttgctggatgaactttgtcagcacaga
ttgattgatcaagtcatacatcttatagatttgaattgccgaaccactatatctcgccct
atatataatggtttgattgggttacttgtaaaactttcttctggttcaattgtagccatc
agaactctatatgagcttaagataagcagcatactgaaggatatattatctacttatgac
ctctcacatggaatgtcttctcctcatatggtggatggacattgcgatcaggtttatgaa
gttcttaagttgcttaatgagctcctacctagtacagctagagatcaagatgctcaacag
gtgttggataaggaatcctttttagttaattcccccagtcttctgcaaaaattcggaatg
gatatacttcccttgttgatccaggtagttaattctggtgcaaatttatatgtttgctat
ggctgcctttctgttatcaacaagttagtttatttcagcaaatctgacatgcttcttgaa
ttgcttaagaataccaacatttcaagttttttggccggagtgttcactcgaaaggatcag
catgtgctcttagtagctctacatattgctgagatgatcctgcaaaagctttctgatatt
ttcctgagttcatttatcaaggaaggtgtcctttttgctattgatgcattgtcagtacaa
gaaaattgtgcgcaattaatgtttcccaaattcactgctgtccagctatcatttgactca
agccagaaatcagcttcaaaggaggttccgagctgcctatgttatgcttttgctactggt
cagcctccgacaacttcagaaactggtagttgcaagcttgaaaatgattctgttcacaaa
cttgcaaagcatgtaaagacaaattacttcacaccgaatttgtctgagcaaggggtgact
gatattcttcaaaaactcagaacctgttctactgctttaagtgatttggttaatgcgaca
ataggtaatgacgcacctgcacggtatgaagagaggttttattgtatagtgcatcaaatt
atggaaactcttaatgggaaggaacccatttccactttcgaatttattgaaagtggggtt
gtgagatcattactgagttacctatccaatggccaatacctaagagaaaagggaaaggct
cagggtgtaaatggtaattttattattgtagaaaaacgatttgagatgttcgcaaggtta
ttcttatcttcttcagagccttactctgtggacttgcccctattggtgctgatacgaaaa
ttacaaagtgcactgtcttctttggaaaatttccctgttattttgagccatggatccaag
caacgatactcatatgcaatggttccaattggacgccgcacaatgcatccatgtctaaag
gttcgctttgtgagaggagagggggagacataccttggtgaatattctggagatgttcag
acagtggaccctttttcctctttggatggcattgaaggctttctgtggcctaaagttagc
attggaagaaatgagcacattaaatcagccagttgcactacgggtaaaactgagagttta
ccgcatgatttaccatcaactgacaatgatgccaacttgtctcagtctgcttttgaacaa
gcacttaatgattttgcaaagcaagaaatgcaacttcctctggaggctgaggtcaatatg
ggagtacagcatcctgcatcttgcagtgatgaagatgccttgcaaaaactggtattttac
cttgaagggcaacagctggatcatacactgacactataccaagcaattctacaaaaacaa
ataaaagaaaatgaatttattactggggcaaaattatggagtcaagtttataccttaacg
tataaaagagctttggaacccatacaaggcaattctcaagagtgtcttcagtcaggccaa
aacttgtctgtatcagataaagttggggcatatatggaatacactccatttgtctccagc
atatatgcttgtgaactcacttctgacttggagaggtcaagttcaacttatgatgtgttg
tttctgctcaaaagcatggaaagcttgcacaggtttacattccatctgatgtctcgtgaa
agaatatgtgcttttgctgaagggaaaattgatgacttggatagtttgaaggtaggagtt
ccttccatgcctcagaatgagtttgtaaacagtaagttgacagaaaaacttgaacagcag
atgcgggactctttgtctgtgtctattggtgggatgccttcttggtgtaaacaattagta
gcttcgtgtccttttctgtttagttttgaggtaagatgtaagtacttccagttagcagca
tttggtcaactgcaatctcagtctcatcaactgtctcatagtaattcaggagccacgagt
gacagacgacccagcactggcagcttgccccgtaagaagtttttggttttccgtgaccag
attctagagtctgctgccaaaataatggacttgcatgcccgttacaaaatgcctgttgaa
attgaatatgatcaagaagttggtactggtcttggtccaacattggaattctataccctg
gtaagttgtgagttccagaaatctggcctgggtatgtggaggggggagtatggtttgttt
gcatccagtacaactttggaagctgaggataagggaattcttatgtcaccttctggactc
tttcctcgcccatggccatctactttgagtacatctgatgaccagttttcagaagtaata
aaaaagtttgtccttttggggcaagtagctgcaaagtctcttcaagatggaagggtgttg
gatctgcacttctcgaaagcattctacaaaattattcttggccgggaacttactctgtat
gacatccagtcgtttgatcccgagctcagtaggacattgctagagtttcaggctcttgtc
aatagaaaaaggtttttggaatcggtcaatggagaaaattcaccagctgaatttgactca
ttctttcgggataccagaattgaggatctttgccttgattttactcttcctgggtatcct
aattatgtacttgcttctgggcctgattacaaaatggttaatatgagaaacttggaggac
tatgtctcgcttattgttgatgcgactataaacagtggaatttccagacaagcagaagca
tttaaatctgggtttaaccaggttttccctatggaacatcttcagatttttactgaagac
gaactagagcatttactatgtggagaacatgattcgttggtgttcaatgagctcctggat
cacgttaagtttgatcatggatacacagctagcagtcttcctatagtcaatttgctggaa
atcatacaagagtttgaccatggacagagacgagcatttctgcagtttgtgactggggca
cccaggcttcctccgggtggtttagcgtctctcaatccaaagttgactgttgtccgaaaa
cattctagcatctgggccgacacagacttaccaagcgtgatgacgtgtgcaaattatctt
aagctccctgcttactcttcaaaagagaggatgaaagagaggctcttatacgccataaca
gaaggccaaggatcatttcacctatcatag
DBGET
integrated database retrieval system
