Carya illinoinensis (pecan): 122275482
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Entry
122275482 CDS
T08745
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122275482
03036 Chromosome and associated proteins [BR:
cill03036
]
122275482
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122275482
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122275482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
122275482
NCBI-ProteinID:
XP_042940500
LinkDB
All DBs
Position
9:5484079..5497321
Genome browser
AA seq
1664 aa
AA seq
DB search
MGKAVVSDEEDEVEVEEEDERNPVHRDAARDVDEDEEDEEDEEGQDEYEKDGFIVDDVDE
EEEQDEEEKEDSDEERQRKKKRKKKENYTLDEDDYELLEDNNITIPRWKQSKKFKRLKKA
QGVTEEEPSGFSDEEEIFGSGKSGRTAEEKLKRSLFGDDEAAPLEDVAEEEEQAEEEDGD
IGEEDEMADFIVDEEDEHRAPPKGGRRLKKGANRRAPGISSSALQEAHEIFGDVDELLQL
RKQGLDSSEWRERRLEDEFEPIVLSEKYMTERDDQIRERDAPERMQISEESTGSPPLDEV
SIDEESTWIYSQLASGTVPLYGKRGRGTPKDGWDLSINKDDIMRFLDLLHVQKLDIPFIA
MYRKEECLSLLKDPEQPEADDDDNQDRSDRTPTLKWHKVLWAIQDLDRKWLLLQKRKSAL
QSYYNKRFEEESRRVYDETRLNLNQQLFESIMKSLKAAESEREVDDVDSKFNLHFPSGEV
GVDEGQYKRPKRKSLYSICGKAGLWEVASKFGYSSEQFGLQLSLEKMRNDELEDPKETPE
EMASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSNFMDHALVSTCPTHDGLAA
IDPFHQFAGVKWLREKPLSAFDDAQWLLIQKAEEEKLLQVTIKMSEEDLNKLTSDFNEYY
LSDGVSKSAQLWNEQRKLILQDALFGFLLPSMEKEARSLLTNRAKNWLLVEYGKVLWNKV
SVGPYQRKETDSSSYDEASPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQN
VNDQQRKKNDQERVLKFMMDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDLGRE
MDGLSIVYGDESLPRLYENSRISSDQLPGQPGIVKRAAALGRYLQNPLAMVATLCGPGRE
ILSWKLSSLENFLAPDEKYGIIEQVMVDLTNQVGLDVNLAIGHEWLFGPLQFISGIGPRK
AASMQRSMVRAGATFTRKDFVTVHGLGKKVFVNAVGFLRVRRSGLAAASSQFIDLLDDTR
IHPESYGLAQELAKDVYDEDIRGEANDDDDALEMAIEHVRERPSILRVLDVDAYAKSKNR
ENKKETFYDIKRELMQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGRIVQATVRRVQA
QKAICVLESGLTGMLMKEDYTDDWRDSPDLSDRLHEGDILTCKIKSIQKNRYQVFLVSRE
SEMQNNRHQYDRNLDPYYHEDRSQLQSEQEKARKEKELAKKLFKPRMIVHPRFQNITLDE
AKEFLSDKDPGESIISPSRHGPSHLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKT
LKIGEDTFEDLDEVMDRYVDPLVSHLKGMLSYRKFRKGTKAEVDELLRIEKLEYPMRIVY
CFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHVDDPQS
AQSLRSVAARVPMRSPATGGSSGASMGSGWGGSTNEDNWRGQSYDRDRSSTPGSRTGRND
HRNGSGRDGHPSGVPRPYGGRGRGRGSFNSTRGNNSSNERQDSGYDGPKWDSATKDGEDG
WGNFPGAKIQNSPGREAFPGGWGNGGSDRGGSSSWGGDGASGSDNGGWGNGSGSAGGNWS
GAGANDAAPDNRSSGWGTTPKRSSSQSQPGGNGWSGSGGGGGGW
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagccgtagtttccgacgaagaagatgaggtcgaggtcgaagaggaggacgag
aggaatcccgtacatagagacgcagcccgcgatgtcgacgaagacgaagaggatgaagaa
gacgaagaagggcaagatgaatatgagaaggatggatttatagtggatgacgttgatgaa
gaagaggaacaagatgaagaagagaaggaagacagtgacgaggagaggcagaggaagaag
aaaaggaagaaaaaagagaattatacactcgatgaagatgattatgaactccttgaggac
aataatattaccattccccgttggaagcagagcaaaaagtttaagaggctgaaaaaagct
cagggggttaccgaggaagagccctctgggttctctgatgaggaggaaatttttggaagt
ggtaaaagtgggcggactgctgaggagaagctcaagcgcagtttatttggcgacgatgaa
gcagctccacttgaggatgtcgctgaagaggaggaacaagcagaagaagaggatggggac
attggtgaagaggatgagatggcagactttattgtggatgaagaagatgaacatagagct
cctcccaaaggagggaggcggctaaagaaaggagcgaataggagggcaccgggaatttcc
tcatctgctttgcaggaagctcatgaaatatttggtgatgttgatgaactcctgcagctc
cgtaagcaaggcttagattctagcgaatggagggaaaggagacttgaagatgaatttgaa
ccaattgttctttctgagaagtatatgacagagagggatgaccagatacgagagcgtgat
gccccagagagaatgcagatatctgaggaaagtacgggttcacctccgttagatgaagtt
agcatagatgaagagagcacctggatatatagtcaactcgcaagtggtacggtaccttta
tatggcaagagaggcagggggacgcctaaggatgggtgggatctttctatcaacaaggat
gatatcatgagatttttggacctgctgcatgtgcagaaattagatatcccctttattgca
atgtatcggaaggaagagtgcctaagcctattgaaagatcctgagcaacctgaagctgat
gatgatgataatcaggataggagtgataggacacccacgcttaagtggcacaaggtactt
tgggcaattcaagacttggacagaaagtggctcctacttcagaagcgaaagagtgccctt
cagtcatactataataagcggtttgaggaagaatctcggcgtgtttatgatgaaacaaga
ctcaatttaaatcagcaactttttgaatcaatcatgaagtcactcaaggcggcagagtca
gaaagggaggttgatgatgttgattccaagtttaacttgcatttcccgtccggtgaagtt
ggtgttgatgaaggacaatacaagaggcctaagaggaaatccctgtatagcatttgtggg
aaagctggcctatgggaggttgcgagcaagtttggctacagttctgagcaatttggattg
cagctatctttagaaaagatgagaaatgacgagttggaggatcctaaggaaacaccagag
gagatggcatcaaactttacatgtgccatgtttgagacacctcaggctgtgcttaaaggg
gctaggcacatggcagctgtggaaatcagttgtgagccatgcgttaggaaacatgtgcgt
agcaattttatggatcatgctctggtatcaacatgtccaacacatgatggccttgcagca
atagatccttttcatcagtttgctggggtaaagtggttgcgcgagaagcccttgagtgca
tttgacgatgcacaatggctccttatccagaaggctgaagaggaaaagcttcttcaagtt
actattaagatgtcagaagaagacttgaataagttgacaagtgactttaatgagtactat
cttagcgatggtgttagtaaatctgctcaactgtggaatgagcagagaaagttgatattg
caggatgcactttttgggtttcttctaccttcgatggagaaagaagcaagatctttgttg
accaatagagcaaaaaattggttacttgtggagtatggtaaggttttgtggaataaagtc
tcagtggggccatatcaaaggaaggaaactgatagcagttcttatgacgaagcttcccca
agagtcatggcttgttgttggggtcctggaaagccggcaaccacttttgtgatgttagat
tcatcaggggaggtgcttgatgtgctttatactggatcccttactttgcggtctcaaaat
gttaatgaccagcaacggaagaaaaacgaccaggaacgtgtattaaagttcatgatggat
catcaaccccatgttgttgttttaggagctgtgaatttgtcatgtactcgtctgaaggac
gatatatatgagattattttcaagatggtggaggaaaatcccagagatcttggccgtgag
atggatgggttaagcattgtttatggtgatgaatctctacctcgtctatatgaaaactct
cggatttcttctgatcagctacctgggcaaccaggcattgttaagcgagctgctgccctc
gggcgatatttgcaaaatcctttggcaatggttgctacactgtgtggacctggaagggag
attttatcatggaaactcagttccctagagaactttcttgccccagatgagaagtatgga
attattgaacaggttatggttgacttaacaaaccaggtgggccttgatgttaatttagcc
attggccatgaatggttatttggtcctttacagttcatttctggaattgggcccagaaag
gctgcatctatgcagaggtccatggtaagagctggggcaacttttacccgaaaggacttt
gtcactgtgcatggacttggtaaaaaggtgtttgtcaatgcggttggttttctgcgtgtc
cggcggagtggattggctgctgctagctcccaattcattgatttgttggatgatacaaga
atacatccagaatcttatgggctcgcacaagagttggccaaagatgtttatgatgaggac
ataagaggtgaagcaaatgatgacgatgatgccttggagatggcgatagagcatgttaga
gaaaggcctagtattttgagagtccttgatgttgatgcctatgctaagagcaagaaccgt
gaaaataaaaaggaaacattctatgatattaaaagggaactaatgcagggttttcaagat
tggcgtaagcaatacgaagagccaagtcaagatgaggagttttatatgatttcaggtgaa
accgaggagacccttgctgagggaagaattgtgcaagctacagtccgcagggtgcaagct
cagaaagcaatttgtgtgctggaatctggattgactgggatgctcatgaaggaagactat
acagatgattggagggacagtcctgatttgtcagacaggctacatgaaggtgacattctc
acttgcaagattaagtcgattcagaagaacaggtatcaggtcttcctagtttctagagag
agtgagatgcaaaataatcgacatcagtatgataggaaccttgatccctattaccatgaa
gaccggagccagctacaaagtgaacaagaaaaagctcgcaaagaaaaggagctagcgaag
aagctatttaagccaaggatgattgttcatcctcgtttccagaatataaccttggatgaa
gccaaggagttcttgtctgacaaggatcctggcgaaagtattatcagtcccagtcgccat
gggccttcacatctgactctaactctcaaagtttatgatggagtttatgctcacaaggac
atagtcgaaggtggaaaggagcacaaggacatcacgagcttacttcgtattgggaagaca
ttgaaaattggggaggacacttttgaggatttggatgaggtaatggatcgatatgttgat
cctttagtgtctcacttgaagggaatgctaagttaccgcaagttcagaaagggaacaaaa
gcggaagttgatgaactcctcagaattgagaaattggagtatcctatgagaatagtttat
tgttttggcatctctcatgagcatccaggcacattcattctgacttatataagaagtaca
aatccgcaccatgagtatattggtttatatccgaagggattcaagtttaggaaaaggatg
tttgaggacattgatcggcttgtggcatactttcagagacatgttgatgatcctcagtca
gcgcaatctctcagatctgtcgctgctagggtgccaatgcgaagccctgcaactgggggc
tcttcgggggcatccatgggtagtggatggggtggttcaaccaatgaggataattggaga
ggccagtcttacgacagggatcgttcttctactcctggttcaagaacaggacgtaatgat
cacagaaatggcagtggccgagatggacatccgagtggggtgccaaggccatatggtggg
cgtggacgtggtcgtggctcattcaacagcactagaggaaataattccagcaatgagagg
caggattctggttatgatggtcctaaatgggattcggctaccaaggatggggaagatgga
tggggaaattttccaggtgccaagattcaaaactcacctggcagggaggccttcccaggt
ggttggggtaatggtggaagcgacagaggtggtagtagtagttggggtggggatggggct
agtggcagtgacaatggtgggtgggggaatggaagtggtagtgccggaggaaattggagt
ggtgctggtgcaaatgatgccgctcctgataacaggagttcaggatggggaactactcca
aagagaagttcttcacagtcgcagcctggggggaatggatggtctggaagtggtggtggt
ggtggtggctggtga
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integrated database retrieval system
