Carya illinoinensis (pecan): 122275484
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Entry
122275484 CDS
T08745
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122275484
04121 Ubiquitin system [BR:
cill04121
]
122275484
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122275484
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
122275484
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122275484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-Nse
CxC4
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
122275484
NCBI-ProteinID:
XP_042940504
LinkDB
All DBs
Position
9:complement(5505058..5507361)
Genome browser
AA seq
312 aa
AA seq
DB search
MSNGRNTHWCYRCNRPVRLRGRDAVCPGCNGGFIQELDDMVHISPFDYFGLDVDEDHDRR
SGVMEAFSAFMRHRLADRSHSHDVRARSDSVPEHAPGFGPLLIFGGQIPFRLSGNGGIEA
ILNGTPGIGLTRGNAGDYFIGPGLEELFEQLSANNRRGPPPASRSSIDAMPTIKIAQRHL
RSDSHCPVCKDKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGMNIGRS
SSSRSRSSSYGGNANGRENSGRDNPGRRNPFSYLWPFRSSHSSSNHNGTAGSSSPTIHEN
NQHTGYSGWPFD
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatggaagaaacacccattggtgctaccgttgcaatagaccagttcgactgcga
ggacgagatgcagtttgccctggctgtaatggaggatttattcaagaacttgatgatatg
gtgcacatcagcccgtttgattattttggactggacgttgatgaagatcacgacaggagg
tcaggagttatggaagctttctcagcctttatgaggcatcgattggcagacagaagccat
agccatgacgttagagctagatcagattcagttccagaacatgctcctggttttggtcct
ctgctgatctttggaggccaaattccttttaggttgtctggaaatggtgggattgaagct
attttgaatgggacccctgggattggtcttacacggggtaatgctggtgattattttata
ggtccaggactggaagagctgtttgaacaactttcagctaacaatcggcgaggccctccc
ccggcatctagatcttcaattgatgctatgccaaccattaagattgctcagaggcatctt
cgttctgattcacactgtcctgtctgcaaagataaattcgagctggggtctgaagcgagg
cagatgccatgtaatcatatgtatcactcagactgcattatcccatggctagtccagcac
aactcatgccctgtgtgccgccaagaactgccaccacaaggaatgaatattggccgcagc
tcaagtagtcgaagtagaagtagcagttatggtggtaatgccaatggaagggagaatagt
ggcagggataatccaggaagacggaatccattctcttatctgtggccattccgttcgtct
cattctagctctaaccataatggaactgctggaagcagctctccaaccattcatgagaac
aaccagcatacgggttattcaggatggccttttgactaa
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