Carya illinoinensis (pecan): 122275513
Help
Entry
122275513 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122275513 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122275513
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122275513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
TPR_8
Motif
Other DBs
NCBI-GeneID:
122275513
NCBI-ProteinID:
XP_042940545
LinkDB
All DBs
Position
9:complement(15981264..16000235)
Genome browser
AA seq
1077 aa
AA seq
DB search
MDSESLVGFDELKLDELITKGSLDFDEWASLISHTEKNYPDDIEKICSVYDSFLSEFPLC
YGYWRKYADHKTRLCTIDKVFEIFERAVQSATYSVGMWVDYCSFSMSAFEDPSDIRRLFQ
RGISFVGKDYLCHALWDKYIQFEFSQQQWSSLAHICIQTLRFPTKRLNHYYDRFKKLVAS
WGEKMEFPSISAGEESPAEPVLDSKAPIWFKNEEISCIIKDLLDPTAGFAKSKALQKYLL
MGELFYKEACQLNEKICCFEANIRRSYFHVKPLDSSQLENWHHYLDFVEMQGDFDWAVKL
YERCLIPCANYPEFWMRYVEFMETKGGREIANHAMDRATLNFLKRVPVIHLFNSRFKEQI
GDTSGARASLQQCESESASNFVENVKLKANMEKRMGNFDAASNVYKEAIEMAATKKMFHT
LPILYIHFSRHVYVRTGSADAARDVLVDGVKHVPHCKLLIEELINFTMMHEGPKHRNVVE
SVIADAISSGLSVSQGLNAKDAEDISSLYLEFVDHCGTIHDLRRAWNRHIRLFPHSLRIA
PYRHPATGTKTLEPAKEGREETSVAKSCQPSGDSCSNLLIQLSLQEKKLSPSGNRDNTQC
DHAPTKVVEQKLPSLENDDNRFELVTICQHLSGESDSNVQEIVKQSSPEDLECTRDDTAE
ADVPPGDVAQEQLVSPEIPDQHRRETPEDSKQHREYAYKLNASSVDLISYIAYETECVQD
SHEYLREYDVQEQCGHESEQDLKQPLLENLSLVTQKDRSPVSVPSTSHRCEAPEETCVLH
GSLLESSCDASPDGSLCSPLGSQASARSGMEAVNPSSSSNQQNLTPAQALKQPQVPANTG
GNWRQNNNTDRIHRQSKFGVRGHSQRKLHQKRQNSPQQYPRAEMDSQTPINQGYSNQPLP
SHNAQVQQSGEAQNQYQAAAAHANLTTHMWPMQNVLQQNFATASESQLPAPHVALQTSQY
SMQNSQEYNQAWQYYYYQQHQFLLQQPNQQLMQQQYQQQLQLQQHYQQQQQQLQHLQQQQ
LQYNQQQQFQMQHQQFLPQQQQHQLYVQQQPQPLQQQQQELEQKEHQQQSTPSEVEA
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggattcagagtctctggtgggttttgatgagctcaagcttgatgaacttattactaaa
ggctcactggactttgacgaatgggcatcactgatttcgcacactgagaaaaattatcct
gatgacattgaaaaaatatgttcagtttatgactccttcttgtccgagtttcccctgtgc
tatggatactggaggaagtacgctgatcataaaacacgcctttgtactattgacaaggtt
tttgaaatctttgaacgagctgttcaatcagcaacatattctgttggcatgtgggttgac
tactgtagtttcagtatgtcagcttttgaggatccatctgatattcgtagattgtttcaa
agaggcatttcctttgttggaaaagattacttgtgccatgctttatgggacaaatacatc
caatttgagttttctcaacaacaatggagctccctagcgcacatttgtatccaaactctg
cggttcccaaccaaaaggttaaatcattattatgatcgttttaagaagttggttgcctca
tggggagagaaaatggaattcccgagcatttctgcgggtgaagaatcaccggcagaacct
gtgcttgatagcaaagcccctatttggtttaagaatgaggaaatttcttgcatcatcaaa
gacctgctggatccaactgctggctttgctaaatctaaagctctccaaaaatacctgttg
atgggagaattgttctataaggaagcatgccagttgaatgaaaaaatttgttgttttgag
gctaatatccggaggtcttatttccacgtgaagccactagattctagtcaattggagaat
tggcatcactatctggactttgttgagatgcaaggggattttgattgggctgttaaactt
tatgagaggtgcttgattccttgtgcgaattaccctgaattctggatgcgttacgtggaa
ttcatggaaaccaagggtggaagagaaatagccaatcatgcaatggaccgagcaacgcta
aactttctgaagagagtgccagttatccatcttttcaattctaggtttaaggagcaaata
ggagatacatcaggggcccgtgccagtttgcagcaatgtgagtcagaatcagcttccaac
tttgtggaaaatgtgaaactgaaggctaacatggaaaagcgtatgggaaattttgatgca
gcttctaatgtatataaagaggcaatagaaatggctgctacaaagaagatgtttcatact
cttcccattttatatattcacttttctcgtcatgtatatgtgagaactggtagtgcagat
gctgccagagatgtcttagtagatggtgtcaaacatgtgcctcactgcaaattacttata
gaggagttgataaatttcacaatgatgcatgaagggccaaagcataggaacgtggtagaa
tctgtgatagctgatgcaatatcttcaggactgagtgtatctcaaggattgaatgcaaaa
gatgcagaggatatttcaagcttgtatttagagtttgttgaccattgtggaactatccat
gatttgaggagggcgtggaaccgtcacatacgattatttccacactctctaaggattgct
ccttataggcacccagctacaggtacaaaaaccttggaaccggctaaggaaggaagagag
gaaacttctgttgctaaatcttgtcagccatctggagattcttgttctaacctcttgatc
cagctctctttacaagagaagaaattgtcaccatcgggaaatcgtgataatactcagtgt
gaccatgctccaaccaaagtagtagaacagaaactgccatctttggaaaatgatgataat
cggtttgagttggttactatttgccagcatctatcaggagaatctgatagtaatgtacag
gaaattgtaaaacagtcatccccagaagatttggagtgcaccagagatgatactgctgaa
gcagatgtaccacctggcgatgtagcacaagagcaactggtgtccccagaaattcctgat
cagcacaggagagagactcctgaagattccaagcagcatagagaatatgcttacaaattg
aacgcatcatcagttgacttaattagttatatcgcttatgaaactgaatgcgtacaagat
tcacatgaatacttaagagaatatgatgttcaggaacaatgtggccatgagtccgaacag
gacctgaagcaacctttgttggagaatctctccttggtcactcagaaggacagatcccca
gtctcagttccctctacatctcacaggtgtgaagctccagaagaaacttgtgtgttgcat
ggaagcttgctagagagcagttgtgatgctagtccagatggttccttgtgcagcccatta
ggttcacaagcttctgccagatctggaatggaagcggtcaatccctcatcttcatcaaac
cagcaaaatcttactccagcacaagcacttaaacagccacaggttcctgcaaacactggt
ggaaactggcgtcaaaacaataatactgatagaatccatagacagtctaaatttggcgtt
cgtgggcattcacaacggaaactgcatcaaaagcgccagaactctccacaacagtacccg
cgggctgaaatggattctcaaacgcctataaatcaaggttattccaatcagcctttgcct
tctcataatgcacaagttcagcaaagcggtgaagcacaaaatcagtatcaagcagcagct
gctcatgctaatttaacaacacacatgtggccaatgcaaaatgtgctgcagcagaatttt
gccaccgcatccgagtctcaactgcctgctcctcatgttgctttgcagacatctcaatat
tcaatgcagaacagccaagaatataaccaggcgtggcaatattattattaccagcagcat
caatttcttctacagcagcctaatcagcagctaatgcagcagcagtatcagcagcaactg
caactgcaacaacattaccagcaacagcagcagcagttgcaacatcttcagcaacaacag
ctacaatacaatcagcagcaacagtttcagatgcaacaccaacaatttctaccgcagcaa
caacagcatcaactttacgtccaacagcagccacagccactacaacagcagcaacaagaa
ctagaacagaaagaacaccagcaacagagtactccatcagaggttgaagcatag
DBGET
integrated database retrieval system
