Carya illinoinensis (pecan): 122275708
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Entry
122275708 CDS
T08745
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122275708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275708
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122275708
mRNA degradation factors
5'-3' decay
Decapping complex
122275708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
122275708
NCBI-ProteinID:
XP_042940833
LinkDB
All DBs
Position
9:12777493..12789895
Genome browser
AA seq
1385 aa
AA seq
DB search
MASSPGNPNLLQNQIQQIDVQKLFNPSPNPPSSPFPSPSSNLNSSPSFPAPSPITSAPYP
MPSSSYPPPTGPSYPFHPHFLPYPPSPLDHFQQHHQNQHQNQLLPSSARLMALLTTQNPP
SPSNSNTTLDFPQLSMPFSSPSPSSPSPSPSPSSAASNTPSSAPPPTRMLSTKLPKGRHL
IGDRVVYDIDVRLQGEVQPQLEVTPITKYGSDPGLVLGRQIAVNRSYICYGLKLGNIRVL
NINTALRSLLRGHTQRVTDMAFFAEDVHLLASAGVDGRVFIWNIHEGPDEEDKPQITGKI
VIAIQIEIDEESVHPRVCWHPHKQEILIVAIGNRILKIDTIKVGRGKVFSAEEPLKCPID
ELIDGIQLVGKHDRQVTELSMCQWMSSRLASASMDGMVKVWEDRKQLPLAVFKPHDGNPV
NSVTFLTAPHRPDHIVLITAGPLNREVKIWASAGEEGWLLPSDAESWKCTQTLDIKSSFE
PKMEDVFFNQVIALPRAGLFLLANAKKNAIYAVHVEYGPNPAATRMDYISEFTVTMPILS
LTGTSDSLPDGEHIVQVYCVQTQAIQQYALHLSQCLPPPLENVELEKSDSTVSHTFNAFD
GSASFTEMPAVNAPPMPSILSSSSEISPVASRPANLSSSEATSMPEVAVSGLETLPTDVP
SHVTAENIHTASPPLPLSPRLTRKLSGIRSPLNSNEPNRSLTDHGGDQPTPEYSSDRGMD
SVKDNVTDVPPSDDNLRKGDKNAAQSDISMVPNPPIVFKQPTHLVTPSELLSTVSASSEN
SQISRGLNVVEAKVQDVNVKNDAENIEVEVKVIGETGTSQNNESDCQRDSHVMVAEKKEK
SFYSQASDLGIQMARDCSVGAYNTKDSSVTKAPNEPPNTCVEEVQGLMKDIPTKVGESET
PTTVLQSPTSALKGKRQKGKNAQASGPSSPSPSPFHSTDLSNETGGSSGAPSMEATLPHL
LPMKAMLDQLINAQKEMQKQMNVIVSGSVIKEGKRLEGSLGRSMEKVVKANTDALWARFQ
EENTKQEKLEQDRLQQITNLMTNYMNKDLPAMLEKTLKKEIALVGPAVVRAITPVVEKTI
SSAVMDSFQKGVGEKAVNQLEKSVSSKLEGTVSRQIQAQFQTSGKQILQDTLRSSLEAAI
IPAFEMSCKAMFEQVDVTFQKGLSKHTTAAQQQFEATLSPLAIALRDSITSASAITQTLS
GELADGQRQLLAIAASGANSKAVNPLVTQLSNGPLAGHHEMAEAPLDPTKELSRLIAEGK
FEEAFTGALHRRDVSIVSWLCSQVDLQIILSTVPLPLSQGVLLALLQQLAYDISKEIPRK
LAWMTDVAVAINPQDPTIAVHVHPIFEQVYQILGHQRNLPTTSASEASSIRLLMHVINSV
LMSCK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacctggaaaccctaatcttcttcagaaccaaattcaacagattgatgtt
cagaagctcttcaatccctcgcccaatcctccttcttctccgtttccttctccttctagc
aatctgaattcctccccatcttttcctgctcctagtcctattacgtctgctccttatccc
atgccgtcgtcttcctatcctcctcctactggcccttcctacccttttcacccccacttc
ctcccttacccaccatccccacttgaccatttccagcagcaccatcaaaatcagcaccag
aatcagcttcttcccagtagtgctcgtttgatggcgctcttgacgacccaaaaccctccc
tccccctcaaattccaatactactcttgatttccctcagctctctatgcccttttcttct
ccatctccatcttcgccttcaccctcgccttcaccctcttccgccgcttccaacacccct
tcctcagcaccacctcccaccaggatgctcagtaccaaacttcccaagggacgccattta
atcggtgatcgcgttgtttacgacatcgatgtccgcttgcaaggcgaagtgcagccccag
ctcgaagtcactcctatcaccaagtacggctccgatcccggcctcgttctcggccgtcag
attgccgttaatagatcttacatatgctatggcctcaagctcggtaatattcgtgtcctt
aacataaatactgcgttaagatctttgcttcgaggtcacacccagagagtaactgatatg
gctttctttgccgaggatgttcacctcttggctagtgctggtgttgatggacgagttttc
atatggaatatacatgagggcccagatgaggaagacaaacctcaaattactggcaaaatt
gttattgctatccaaattgaaatagatgaggaatcagttcacccacgagtgtgttggcat
cctcacaaacaagaaattttgatagttgccattggaaatcgtatcctcaaaattgacacc
ataaaagttggaaggggcaaggtattttcagcagaggaacctcttaaatgtccaattgat
gaactaattgacgggatccaattggttggtaaacatgatcgtcaagttactgaactgtca
atgtgccagtggatgagcagccgcttagcttcagcatcgatggatgggatggtgaaggtt
tgggaagaccgtaagcaactaccacttgcagtatttaaaccacatgatggcaatcctgtt
aattctgtgacattcttgactgctcctcaccgtcctgatcacattgttcttattacagcg
gggccactgaatcgggaagtgaaaatatgggcctctgcaggtgaggagggctggttgtta
cctagtgatgctgaatcatggaagtgcactcaaactttggatataaagagttcttttgaa
cccaagatggaggatgtattctttaatcaagtcatagcattgcctcgtgcaggtctattt
ctacttgcaaatgccaagaagaatgctatatatgctgtacatgtagagtatggacctaat
ccagctgcaacccgcatggattacatttctgagtttacggtcacaatgcctatcttgagt
cttactggaaccagtgacagtctaccagatggagaacatattgtccaggtctactgtgtt
cagacacaagccattcagcaatatgcacttcacctatctcagtgcctgccaccacccctg
gaaaatgtggagttggagaaatctgactcaactgtttcccacactttcaatgcttttgat
ggttctgcttctttcaccgagatgcctgcagttaatgcacctcctatgccatctattctt
tcaagcagctctgaaatcagcccagttgcaagccgtcctgcaaacctgtcttcttctgag
gctactagcatgccggaggttgctgtttctgggctggaaacattgccaactgatgtgcct
tctcacgttacagctgaaaacatccacactgcatcacctcctcttcctttgagtccaagg
ttaactcgcaaattatctggtattagaagtcctttaaatagcaatgagcctaatcgatct
ctcacagaccatggtggtgaccaaccaactcctgaatattcgtctgatcggggaatggat
tccgtcaaagataacgtgactgatgtgcctccctcagatgataatttgaggaagggtgac
aaaaatgctgcacaaagtgatatttctatggttcccaatcctcctatagtctttaaacag
ccaacacacctggtaactccatcagagttattatctactgtttctgcatcatctgagaac
tcccaaattagtcggggtttgaatgtggttgaggcaaaggttcaagatgtgaacgttaag
aatgatgctgaaaacattgaagtagaagttaaagtcatcggtgagaccggaaccagtcaa
aataatgaatctgactgtcagagagattcccacgttatggttgcagagaaaaaggagaaa
tccttctattcccaggcatcagatcttggcattcaaatggccagagattgttctgtggga
gcttataacactaaagatagtagtgttactaaggcaccaaatgaacctcctaacacttgt
gtggaagaagttcaaggcttgatgaaggatatacctacaaaggttggcgaatcagaaact
ccaacgacagttttgcagtctccaacatcagctctgaaaggcaaaagacaaaagggcaaa
aatgctcaagcgtctggtccatcttccccttctccaagtccttttcactccactgattta
tcaaacgaaacaggtggtagttcaggtgccccatctatggaagccactttgccccactta
ttgcctatgaaggcaatgcttgaccagttaataaacgcacaaaaagaaatgcagaagcag
atgaatgtgatagtttctggttcagttatcaaagaaggtaaaagactagagggatccttg
ggccggagtatggagaaagttgtcaaggctaacactgatgctctgtgggctcgtttccaa
gaggaaaacacaaagcaggagaagttagaacaagaccgtttgcagcagataacaaacttg
atgacgaattatatgaacaaggacttgccagccatgctcgagaaaactctaaagaaggaa
atagctttggttggaccagctgtagtgcgtgcaattactccagttgtggagaaaaccatt
tcatcagctgttatggattcattccagaaaggagtgggagaaaaggcagtgaaccaacta
gagaagtcggttagttcaaaactcgaaggtacggtgtctaggcaaattcaagcacagttt
caaacttcagggaagcaaattcttcaggatacattaaggtctagtctcgaagctgcaatc
attcctgcatttgagatgtcatgcaaagctatgtttgagcaagttgatgtcacattccag
aaagggcttagtaaacatacaactgctgctcagcagcagtttgaggccacactttctcca
cttgctattgctttaagggattcaattacttcagcatcggcaatcactcaaacattgagt
ggagaattggctgatggccaacggcagctgttagccattgctgcttcaggtgctaattca
aaagcagtaaatcctttggtaacacagttgagcaatggaccattggcaggtcatcatgag
atggctgaggcacctttggatccaactaaagaactatctagactgatagctgagggcaaa
tttgaggaagcattcactggtgccctgcacagaagggatgtctcaatagtttcatggtta
tgttctcaggttgatttacagataattttgtcaacggtgccacttcctctaagccaagga
gttctgctagctcttctccaacaactggcttatgatattagcaaggaaatacccagaaag
ctggcatggatgacagacgtagctgttgccataaacccacaagatccaacgattgcagtg
catgtgcatcccattttcgagcaggtatatcagatactgggtcatcaacggaacctacca
actacctctgcttctgaagcgagcagcatccgccttcttatgcacgtcatcaactctgtg
ttaatgagctgtaaatga
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integrated database retrieval system
