Carya illinoinensis (pecan): 122275767
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Entry
122275767 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275767
03041 Spliceosome [BR:
cill03041
]
122275767
03036 Chromosome and associated proteins [BR:
cill03036
]
122275767
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122275767
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122275767
mRNA cycle factors
Common to processing body (P body) and stress granule
122275767
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122275767
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122275767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122275767
NCBI-ProteinID:
XP_042940927
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All DBs
Position
9:2789026..2794355
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AA seq
632 aa
AA seq
DB search
MTTSWADSVANTASENVATGASNSNGLKRPTRSTYVPPHLRNRQPPSSDPPAQLQTSSPA
NDRVDYGGITTKSHWGGGSRPDFGRTGHNVSIVGRGGSGWNSRSGGWERGREREVNPFGD
DENLTQEFRDQENMGINFEAYDDIPVETSGNNVPPPVNTFAEIDLGDALNQNIWRCKYVK
PTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQYVQRPRGARIVYPLAL
ILSPTRELSCQIHNEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL
LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPSPGARQTMLFSATFPKEIQ
RLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLIHAQKENGVQGKQTLT
LVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQRRPKALSYLVLLQEREQALRLFKSGK
TPILVATDVAARGLDIPHVGHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSS
MARPLADLMQEANQEVPAWLTRYASRASYGGGGGRNRRSGGGRFGGRDFRRDGSFNRTTD
YYGGANSSGGYGFSGGYGGGGGYGTGVTSAWD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttcatgggcagattctgtggctaacactgcatctgagaatgtggcaactggt
gcttctaatagcaatggcttaaaacgccctacccgatcaacctatgttccaccacatctt
cgtaataggcaacctccttcatcagacccccctgctcaattacaaacttcttcaccagcc
aatgatcgggttgactatggtggaatcacaaccaagtcacactggggtggaggttctagg
cccgactttgggcgtacaggacataatgtttctattgttggtcgagggggtagtggatgg
aatagtagaagtggggggtgggaacgagggagagaacgtgaggtgaacccttttggtgat
gatgaaaatttaactcaagaatttagggatcaagaaaatatgggtattaactttgaggct
tatgatgacattcctgtggagacgagtgggaacaatgtgcccccacctgttaatactttt
gcagagattgacttgggggacgcattgaatcaaaatatttggaggtgcaagtatgtgaaa
ccaactcccgtacagcgttatgctataccaatttctcttgcggggcgggatctaatggct
tgtgctcagactggatcagggaagacggctgccttttgctttccgattatcagtggaatc
atgcggggccagtatgttcagagaccacgtggagcacggattgtgtaccctcttgctttg
attctttcgcctacaagggagttatcatgccagatacacaatgaagcaagaaagttttcc
tatcaaactggtgtcaaggtggtcgttgcctatggaggagcaccaatcaatcaacagttg
cgagagcttgagagaggagttgatatccttgtggcaactccaggccgattggttgatttg
ctcgagagggctagagtctcattgcagatgatcagatatttggctcttgatgaggcagat
cggatgctggatatgggttttgagccccaaatccgaaagatagtggagcaaatggacatg
ccttcaccaggtgcgagacagacgatgctgtttagtgccacctttcctaaagagatacag
aggttggcatctgattttctttcaaattacatatttttggctgttggaagggttggttca
agtactgatttgattgtccaaagagttgaatttgttcacgagtctgacaagagaagccat
cttatggatcttattcatgctcagaaggaaaatggagttcagggcaagcaaaccttaaca
ttagtttttgtggagacaaagaagggagctgactcattggagcattggttgtgccttaat
ggatttcctgcaactaccattcatggtgatagaacacaacagcgtcgaccaaaagccttg
tcgtacttggttttgttgcaggagagagagcaagcattgagattgttcaaaagcggaaag
acaccaattttagtggcaacagatgtggcagcacgtggtcttgacattcctcacgtaggg
catgtggtcaactttgatcttccaaatgacattgatgattacgttcaccggataggacgt
acggggcgggctggaaaaacaggattggcaacggccttctttaacgagaataattcatcg
atggcaaggccactagctgatctaatgcaagaagcaaatcaagaagtacctgcttggctt
acacgttatgcatcaagggcttcttatggtgggggaggtggcagaaatcggcggtctggg
ggaggccgttttggtggccgtgattttaggagggacggttcatttaatagaaccacagat
tactatggtggagcaaatagtagcggtggatatgggttttctggtggttatggcgggggt
ggggggtatggtacaggcgtgaccagtgcttgggattag
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