Carya illinoinensis (pecan): 122275775
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Entry
122275775 CDS
T08745
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122275775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275775
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122275775
mRNA cycle factors
Common to processing body (P body) and stress granule
122275775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
122275775
NCBI-ProteinID:
XP_042940942
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All DBs
Position
9:4968581..4975549
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AA seq
984 aa
AA seq
DB search
MMVVLMDNSLDLSSRERAQRLYKLNVNLENKRTGLARARIPSDPIAWHRMRDNFEGIILE
DHTFSEQHDIEFGLWQLHYRRIEELRSHLNDSLDSNGSATIHDGKSSSRPDRISKIRSQF
KTFLSEATGFYHDLMLKIRGKYGLPLNYFPGDPENEFIVYKEGNKSAEMKKGLISCHRCL
IYLGDLSRYKGLYGDADSKSRDYAAASSYYMQASSIWPSSGNPHHQLALLASYSGDELVT
IFRYFRSLAVDNPFSNARDNLIIAFEKNRQSFSQLLDDGKASSIRTARVRIHGKRRGRGG
TMPLLKHDKTDVRSAKESASSISDISKAFSIKFVRLNGILFTRTSLETFGDVFSMVRFDL
LELLSSGPEDAYNFGSNAADSGMIILRLITILIATAHNVSREDENQSCAKMLQRSVLLQN
AYTAIFEFMGLILERCMQLFDPLKSYLLPGVLIFMEWLACHTEIAAGSEVEEKEAAARSF
FWSNCVSFLNKLLLSGLISAIEDEDETCFVNMTRYDEGETANRLALWEDYELRGFLPLVP
AHMILDFSRKQSLGSDNSDKERKARFQRIIAAGKSLVSIVRVEQEYVFFDPMLKKFAIGN
ESHICDDFVLTSSLEMPVSNGMGHSPVKKVNVGNLQPEAQPYLEGEEEDEIIVFQPSVTD
NHADVLDPKFSYNFHAPGGNASLGDKGCCIESVSAPLGGKISESTLDTDSIAPNAPISLT
TILPPHLQSIQPCNSKWLLEQQVCLANGLNSFYLTENRLVRKPSLQEHFEVLQPAAVSVA
LPQALDISAGNELFAQVSDYRIPSKFDSTMSTGASFDSLSLNSSMTLPTSLRKNRMSRPL
RHFGPPPGFGPVPPKRASESLSETTLEKETLKLDDYSWLDGYQLPLPTKDTVFDKPITHT
AQSYHQASKGNTGMIRFPFPGKQVPNLQVQMENQKNWQGYEAPDHLNVYQRWQQQQQLSK
INQDFIPMPKQHEGQTLWDGHFFV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggtcctgatggataattctttggatctttcatcaagggagcgtgctcaacgt
ctttacaaattgaatgtcaacttggagaacaaacgcacgggactggcccgggcgagaatt
ccatcagatcccattgcttggcatcggatgcgagacaatttcgaaggaattatacttgag
gatcatactttctctgaacaacatgatattgagtttggtctgtggcagttgcattacagg
cgaattgaggagcttcgttcacacctcaatgattctctggattcaaatggttcagccaca
atccacgatgggaaatcttcttcaagacctgatcgaatctcaaaaatacgctctcagttt
aaaacattcctttctgaagcaactggattttatcatgatctgatgttgaaaatcagagga
aagtatggtctacccctaaattattttccaggtgatccagagaatgagttcatagtgtat
aaagaaggaaataaatctgctgagatgaagaaaggcttgatttcttgtcatcgttgtctg
atttatctgggtgacctatcgcgttataaagggttatatggggatgctgattccaaaagt
agagattacgccgcggcatcaagttattatatgcaagcttcttcaatctggccttcaagt
ggcaaccctcatcatcagcttgcattattggcttcatattccggggatgaattggtgaca
atctttcgctatttccgaagtctggcagttgataacccattttcaaatgcaagagataat
ttgattattgcatttgagaagaatcggcaaagcttttcccagctgcttgatgatggaaaa
gcttcctcaatcaggactgcacgtgtgcgaatacatgggaaaagaagaggaagaggtgga
acaatgcctctcttgaaacatgataaaacagatgtgagatctgctaaggagagtgcatcc
agtatatctgatatttctaaagctttcagcattaagtttgttcgacttaatggtattctt
ttcactcgtacaagtctggaaacatttggtgatgttttctctatggttagatttgatttg
cttgagcttctttcttctgggccggaagatgcatacaattttggttcaaatgctgcagac
agtggaatgattattcttaggcttataaccattcttatagccacagctcacaatgttagt
agggaagatgagaatcagtcgtgtgctaaaatgttacaacgttcagttttgcttcagaat
gcatatactgccatctttgagtttatggggcttatacttgagagatgcatgcaactgttt
gatccattgaaaagctatttactgcctggagtgctgatttttatggagtggttagcctgt
catactgaaattgcagctggcagtgaagttgaggagaaagaagctgctgctaggtcattt
ttctggagtaattgcgtttcattcttgaacaagctcttgttgagtggcttaatttctgct
attgaggatgaagatgaaacttgttttgttaatatgacaaggtatgatgaaggtgaaact
gccaatcggcttgcactgtgggaggattacgaattgagaggttttctccctctcgttcct
gcacatatgattcttgatttttcaaggaagcaatctttgggaagtgataatagtgataag
gagagaaaagctcgctttcaaaggattatagcagctggaaagtctcttgttagcatagtt
cgggttgagcaagaatatgtattttttgatccaatgctgaagaagtttgcgattggcaat
gaatctcatatatgtgatgattttgtgcttactagttctttggagatgcctgtttcgaat
ggcatgggacattcaccggtaaagaaagtgaatgtgggaaatttgcagccagaggcacag
ccatatttagaaggagaagaagaggatgagattattgttttccaaccatctgtgactgat
aatcatgcagatgtccttgatcccaagttttcttacaattttcatgcccctggtggcaat
gcttccctgggtgataagggatgttgtattgaatctgtttcagccccacttggtggtaaa
atatcagagagcactttagatactgattcaattgccccaaatgctccaatatctcttact
accattctgcccccgcatctgcaatcaatacaaccatgtaattcaaagtggctgctggag
caacaagtttgtcttgccaatggattgaacagtttttacttaacagagaataggcttgtc
agaaaacctagtttgcaagaacattttgaagttttgcagcctgctgcagtctcagttgcc
ctcccacaggctctggatatcagtgctggcaatgagctttttgctcaggtttctgactac
aggataccatccaagtttgattcaactatgtctactggagccagctttgatagtctctct
ctcaactcatcaatgaccttgccaacaagtttaagaaagaatcgaatgagcaggccactg
aggcactttggtcctccacctggatttggccctgttcctccaaaacgagcgagcgagtcc
ttgtctgagactactttggagaaagagactttgaagctggatgattatagctggctagat
ggatatcagttgccattgccaactaaggacactgtgtttgacaagcctatcactcacact
gcacaatcgtatcatcaagcaagtaagggcaatacgggtatgatacgttttccatttcct
ggaaaacaagtcccaaatttgcaagtccaaatggaaaaccagaaaaactggcagggatat
gaggctcctgatcatctaaacgtataccagaggtggcagcaacagcagcaacttagtaaa
ataaatcaggactttattcctatgccaaagcagcatgaaggacaaactttgtgggatggc
catttctttgtgtga
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