Carya illinoinensis (pecan): 122275776
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Entry
122275776 CDS
T08745
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122275776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275776
03041 Spliceosome [BR:
cill03041
]
122275776
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122275776
Spliceosome [BR:
cill03041
]
Complex B
Other components
Prp19-related factors
122275776
Complex C
122275776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_12
TPR_15
TPR_19
ARM_TT21
NRDE-2
DUF5955
Motif
Other DBs
NCBI-GeneID:
122275776
NCBI-ProteinID:
XP_042940945
LinkDB
All DBs
Position
9:25034242..25049460
Genome browser
AA seq
913 aa
AA seq
DB search
MIVDKEMYPSQEDLLYEEEVLRNPFSLKLWWRYLIARSDAPFKKRFVIYERALKALPGSY
KLWYAYLRERLDLVRNLPVTHSLFQALNNTFERALVTMHKMPRIWIMYLQTLTDQKLLAR
TRHTFDRALCALPVTQHDRIWEPYLVFVSQKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
VNSSLWQEAAERLASVLNDDEFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGIMTVVTVRDFSVIFDSYSQFEESML
AHKMESVSSSDEEEEGEEENDVDDDEDVRLDLNLSVAKLEKKILNGFWLHDTKDIDLRIA
RLEDLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPNKAVG
KPHTLWVNFARLYENHKDVANARVIFDKAVQVNYKTVDHLATLYCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAADGSEPVQIKLYKSLRLWTFYVDLEESLGTLESTRSVYER
ILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYADLEKSLGEIDRSRGIF
VFASQFADPRSDGDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYMMQK
DQRLNLDDARDKLKQAGVAEDEMAALERQLAPAASNAKDSSRKVGFVSAGVESQTDGGIK
APANHEDIELPEGSDSDEDEKVEIAQKDVPSAVFGGLVHKRDEAEKDGEEQNKDKDDDSR
LGALERIKRQKRA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgattgtggataaggagatgtatccctcgcaggaggacttgctgtacgaagaggaggtt
ctccgcaacccattcagccttaagctctggtggcgctacctcatcgcgcgttccgatgcc
cccttcaagaagcgattcgtcatctacgaacgagccctcaaggctctccctggtagctac
aagctctggtacgcctatcttcgcgaacgtctcgacctcgttcgcaacctcccagtcact
cactctctcttccaagccctaaacaacactttcgaacgcgcccttgtcaccatgcacaaa
atgccccgcatttggatcatgtacctccaaaccctcaccgaccagaaattgctcgcccgc
actcgccacaccttcgacagagcactctgcgccctcccggttacccagcacgaccgcatt
tgggaaccctacctcgtgttcgtcagccaaaagggtgtccctatagagacctctcttagg
gtttatcgcaggtacttgaaatacgaccctactcatattgaagatttcattgaatttttg
gttaattcgagtctttggcaagaggcagcggagcggttagcttcagttttgaacgacgat
gagttttattctattaagggaaagaccaaacataggctgtggttggagttgtgtgatttg
cttactaggcatgccactgaagtctccgggttgaatgtggatgccataattaggggtggg
attaggaagttcaccgatgaggttgggcggttgtggacctcgcttgctgagtattatatt
aggaggaatttgcacgaaaaggctagggatatatttgaggagggtatcatgactgtggtt
actgtgagggattttagtgtgatttttgattcgtattcgcaatttgaagagagtatgctt
gctcataagatggaaagtgtgagttcgagtgatgaggaggaggagggtgaagaagaaaat
gatgttgatgatgatgaagatgttcggttggatttgaacttatcagtggccaaacttgag
aagaagatacttaatgggttctggttacatgataccaaggatatagatttaaggattgcc
cgattggaggatctcataaatagacgaccagaattggctaatagtgttctgttacgccaa
aatcctcataatgtggaacagtggcaccgaagggtgaagctgtttgagggtaatcccacg
aagcagatattgacttacactgaggcagtgaggacggttgaccctaataaagccgtggga
aagcctcatacattgtgggttaattttgcccggctgtatgagaaccacaaagatgttgcc
aatgccagagttatatttgacaaggctgtgcaagtgaactacaagactgtggatcatttg
gctactttgtactgtgaatgggctgaaatggaactgaggcataagaatttcaagggagca
cttgacttgatgaggcgggctacagcagagccctcagtagaggttaaacgaagagtggct
gctgatggttctgaaccagttcagataaagctctataagtccttgagactttggaccttc
tacgttgatttggaagagagcttgggtacgttggaatctacccgatcagtgtacgagcgg
atactggatctaagaatagccacgccacaaattattctcaactatgcatttctgctggaa
gaacataaatactttgaagatgcattcaaggtatatgaaagaggtgtgaagattttcaag
tatccacatgttaaagacatatgggttacatatctatcaaaatttgtgaagagatatgga
aagacaaaactggagcgggcaagagagctgtttgagcatgctgttgaaacagcccctgct
gatgcagtaaaacctttgtatcttcaatatgcaaagctggaggaggattatggtctggca
aagcgagcaatgaaagtctatgatcaagcaactaaagctgttccaaacaatgagaaattg
agcatgtatgaaatttacattgctcgagcagcagagatctttggagttccaaaaacaagg
gaaatatacgagcaagcaatagagtctggtctcccagacaaagatgtgaaggccatgtgc
ttgaagtatgcagaccttgaaaagagcttgggtgaaattgatcgttctcgtggaatattt
gtatttgcttcccaatttgcagatccacgctctgatggggatttctggaataaatggcat
gagtttgaggtgcagcatggaaatgaagataccttcagggaaatgcttcgcattaaaagg
agtgtttctgcgagctatagtcagacgcattttatattgcctgagtatatgatgcaaaag
gatcagaggttgaaccttgatgatgcaagagacaagttgaaacaagcaggggtcgctgaa
gatgaaatggctgctctcgaaaggcagttggctcctgcagccagcaatgctaaagacagc
agcagaaaagtgggctttgtgagtgctggtgtcgaatcacagactgatggtggcataaaa
gctccagccaatcatgaagatatagaactgccagaaggaagtgattcagatgaggatgaa
aaggttgaaattgcgcagaaagatgttccatcagcagtttttggaggtttggtgcataag
agagatgaggccgagaaagatggggaagagcagaacaaagataaggatgacgacagccgc
ctaggtgctcttgagagaataaagaggcaaaagcgagcgtga
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