Carya illinoinensis (pecan): 122275778
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Entry
122275778 CDS
T08745
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122275778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122275778
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122275778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_EIPR1
PRP4
NBCH_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR41
eIF2A
WD_LRWD1
Beta-prop_Nup120_160
DUF7899
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
122275778
NCBI-ProteinID:
XP_042940946
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All DBs
Position
9:4370232..4374497
Genome browser
AA seq
572 aa
AA seq
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MEVNEEVPASTSPEEVSDLVPDGQTVVSAVNAAPVQPIQPIVPPVVVPPTIAPIPPPPVL
RPLAPLPVRPPVLRPPVSQNGEVRMSDSDSDHDDLGPNRTATGSTGEYEVSEESRFIRER
QEKAIQELLMKRRAKALAVPTNDMAVRTRLRKLGEPMTLFGEREMERRERLRTIMVKLDA
EGQLEKLMRAHEEEEAAASAPKVDAEEEFVEYPFYTEGTKSLLDARVNIAKYSLARAALR
IQRAQRKRDDPDEDVDAEMDWALKQSENLVLDCSEIGDDRPLCGCSFSRDGKLLATCSLS
GVGKLWSMPQVKKVSTLKGHTERATDVTFSPVHDHLATASADRTAKLWNTEGSLLRTFEG
HLDRLARISFHPSGKYLGTASFDKTWRLWDVDTGEELLLQEGHSRSVYGIAFHHDGSLAA
SCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYLLATGGEDNTCRVWDLRKKKS
LYTIPAHSNLISEVKFEPQEGYFLVTASYDMTAKIWSARDFKPVKTLAGHEAKVTSLDVV
GDGRYIATVSHDRTIKLWSSSSNEKEHAMDVD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcaacgaagaagtccctgcatcaacttctcctgaagaggtttctgatttggtc
cctgatggtcaaactgtagtttctgctgttaacgctgccccagtccaaccaatccaacca
atagttccacctgtggttgtgcctcctaccattgctcccattcctcctcctcctgtactc
cgcccattggcacctctccccgttcgccctcctgttctaaggccacctgtttcacaaaat
ggtgaggtgagaatgagtgactcagattcagaccatgatgacttgggcccaaaccggact
gcaactggttcaactggggagtatgaggtatcagaagagagcagatttataagagagagg
caggaaaaggcaattcaagagcttttaatgaagcggcgagctaaagctctagcagttcct
actaatgacatggctgtccgaacacgtcttcgcaagcttggtgaacctatgacccttttt
ggagaaagagagatggaaagacgtgagaggttgcggacaattatggtcaaactagatgct
gaagggcaactggaaaagctgatgagagctcatgaggaggaagaggctgcagcttctgct
ccaaaagtggatgctgaggaagaatttgttgagtaccccttttatactgaaggcacaaaa
tctctcttggatgctagagtcaacattgcaaagtactctcttgcgagggcagctttgcgt
attcaacgtgctcagaggaaaagggatgatccagatgaagatgtggatgctgagatggat
tgggctctgaagcaatcggagaatttggtgcttgactgcagtgagattggggatgaccgg
ccactctgtggttgttcattttcacgggatggaaaactgcttgctacgtgctctttaagt
ggagttggtaagttgtggagcatgcctcaagtgaaaaaggtgtctacgttgaagggacac
acagagcgagctactgatgttacattctctcctgtgcatgaccatcttgctactgcctct
gctgaccggactgcaaagttgtggaacactgaaggatctctcttgaggacatttgagggc
catctagaccgtcttgcccgcatttctttccatccatcagggaagtacttgggcactgct
agctttgataagacatggagattatgggatgtagatactggtgaggagttgcttcttcaa
gaaggtcacagtaggagcgtctatgggatagcgttccaccatgatgggtcattagcagca
tcttgtggacttgattcacttgctcgtgtttgggaccttcgaacaggcagaagtattctt
gccttagaaggccatgtcaagccagttctgggaattagcttctctcccaatggctacctt
ttagccactgggggtgaagacaatacctgtcgagtctgggatctgagaaagaagaaatct
ttgtatacaatcccagcgcattccaaccttatttctgaagtaaaatttgagcctcaggaa
ggatatttcttggtaactgcttcctatgatatgacagctaagatttggtcagcacgggat
tttaagccagtgaagacacttgctggacatgaagcgaaagtcacatctctagatgttgtt
ggagatgggcgttacatagcaaccgtatcacatgatcggacgattaaactgtggtctagc
agtagcaatgagaaggaacacgctatggatgttgactag
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