Carya illinoinensis (pecan): 122275815
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Entry
122275815 CDS
T08745
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122275815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122275815
03019 Messenger RNA biogenesis [BR:
cill03019
]
122275815
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122275815
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122275815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Ribonuc_2-5A
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122275815
NCBI-ProteinID:
XP_042941019
LinkDB
All DBs
Position
9:complement(9925122..9931784)
Genome browser
AA seq
1020 aa
AA seq
DB search
MASMDSEKLLVNRENLRNQSVARAMANELAPQKSPQTILDRFRSLLKQRDDEFRNSAVDD
AVSPPRAEEIVQLYDLFLSELTFNSKPIITDLTIIAGEHKQLGKGIADAICARILEVPVE
QKLPLLYLLDSIVKNIGRDYVTYFSSRLPEVFCEAYRQVHPNQHNSMRHLFGTWSAVFPP
SVLHKIEVQLQFSPSVNQQSSGLNPLRASESPRPSHGIHVNPKYLRQFEHSAVDSNIQQA
RGTSAVKMFGKKPAIGFDEFDSGQAELVPSQVGAERLSSTGNAGNAPFAFGANKVRPPST
IRLGRPSSPSRTRPDRSLSLAVEEFAADHSPRRFVGGGSPAHPVYEYGLSRATARDEEMS
GRQRKHYSDNKHNHFETKILHNLSNEREHQGPRALIDAYGNDTGKRSFNNKPLQGQRLDL
NSIDNKVATPSWQNTEEEEFDWEDMSPTLADSNRSNDFLPRTRPGIGVQSASPLNAGQAH
LPAVDDSSVNAEDSVPLLSQFGRGSMRKISGFQAERNQILDPRYPHEAWNLPPHLSKGRG
RNYNLPLLASRISSSDGDKMPSLIDKLPDADPQLHGPPTIISRFGSSNLDSIGVEARSTV
LPASRGVRPSLNVHNSRPPYLQHIFPQQRVMGGQFESINTSNAVNNLGPNGSLHMPELQS
DGFRNRELSSTKLPQLPNQHRGLIHVNQRNQVQGTPLQPQFLPSQEAHPSLAAVVQPHLV
APPYNRGYSPQMHGSTVSTVLSNPVTGIQLMLPVQNIPSSLHLQGGALPPLPPGAPPTSS
HMIPFTQNAVPAVANQQTNISGLIGSLMAQGFISLTKQTPIQDSVGVEFNVDLLKVRHET
AISSLYADLPRQCTTCGLRFKCQEEHSRHMDWHVTKNRMSKNRKQKPSRKWFVSSSMWLS
GAEALGTEAVPGFLPTEIIVEKKDDEEMAVPADEDQNACALCGEPFDDFYSDETEEWMYK
GAVYLNAPCGSTAGMDRSQLGPIVHAKCRSESSAVSTEGFRQDEGGITAEGSQSKRMRLS
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatggactcggaaaagctcttagttaacagagaaaacctaaggaaccaatcg
gtggcgagggcaatggccaacgagctcgcgccacaaaagtcaccccaaacgattcttgat
cgcttcaggtctctgctaaagcagcgcgacgatgagtttaggaactcggccgtagacgat
gctgtctctccgccgagggccgaggaaatcgttcagctttacgatctcttcttgtcggaa
ctaacgtttaattcgaagcccattatcacggatctcactataatcgccggcgagcataag
caactcggcaagggcatcgccgacgccatttgcgctcggattctcgaggtcccagtcgag
caaaagctgcctttattatatcttttagacagtattgttaagaatattggccgggattat
gttacgtacttctcttctcgactgccagaggttttttgcgaggcatacaggcaagttcac
cctaatcagcataattccatgcgccatctctttggcacctggtcagcagtattcccacct
tctgtcctacataaaattgaggtacaactgcaattttctccttcggtaaaccagcaatca
tctggcttgaatcccttgagagcttcagaatctcctcgaccaagccatggcatacatgtt
aatccaaagtatctgcggcagtttgaacattcagctgtggacagtaatatccagcaagct
agaggaacttcagctgtaaaaatgtttggtaaaaaacctgccattggatttgatgagttt
gattctggtcaggcagagcttgtaccctcccaggttggagctgaaagattgagctcaaca
ggaaatgcaggtaatgccccttttgcctttggggctaataaggtgcgtccaccttcaacc
atcagactcgggagaccctcttcgccatcaagaaccaggcctgataggtccttgtcgttg
gcagttgaagaatttgctgcagaccattctcctagaaggtttgttggtgggggctctcca
gcgcatcccgtatatgagtatggactaagtagagcaactgctagagatgaggaaatgagt
ggccggcagagaaaacattattccgataataagcataaccactttgaaactaaaatacta
cacaaccttagtaacgaacgtgagcaccaaggaccaagagctctaattgatgcctatgga
aatgacacagggaagagatcttttaacaataagcctctgcagggtcaacgccttgactta
aacagtatagacaataaggttgctacaccatcatggcagaatactgaagaggaagagttt
gattgggaagatatgagccccactttagcagacagtaataggagtaatgatttcttgcca
aggacaaggcctggtattggagtacagagtgcttcccctctgaatgctggtcaggctcat
cttcctgcagtggatgattcttctgttaatgctgaagattcagtccccttactaagtcag
ttcggtcgtggatcaatgaggaagatatctggattccaagctgagagaaatcagattctt
gatcctcgctatcctcatgaggcctggaatttgcctccccatctctccaaaggaagagga
aggaattacaatttgcccttattggcaagtcgtatatcttcatcagatggtgacaaaatg
ccctctcttattgataaacttcccgatgccgacccacaacttcatggacctccaactatt
atatcaagatttggttcttccaatcttgattctattggtgttgaggctcggtcgactgtt
ctaccagcatctaggggtgtaaggccttctctaaatgtgcataactctcgcccaccatac
ctgcagcatatttttccacagcagagagtgatggggggccaatttgagtcaataaacact
agcaatgctgtcaataatcttggtcccaatgggtctttacatatgcccgagctgcagtcg
gatggttttagaaacagggagctgagttctacaaagctgccacaactgcctaatcagcat
cgaggactaattcatgtgaatcagcgaaaccaggttcaaggcactcctttacagccacaa
tttcttccatctcaggaggcacatccatctttagcagctgtagtgcaacctcatttagtg
gcaccaccttataatcgtggatacagcccacaaatgcatggttccactgttagcacagtt
ctgtcaaatcctgtaactggtattcagttgatgttacccgttcaaaacatcccaagctca
ttacatttacaggggggagccttgcctcctttacctcctggtgcccctccgacttcgtca
catatgatacctttcacacaaaatgcagttcctgctgtcgctaatcaacagacgaacatt
tctggattgattggttctctcatggctcagggttttatctcattgaccaaacagacccct
atacaggattctgtaggagttgagttcaatgtggaccttctcaaggtgcgtcatgagact
gcaataagttccctgtacgccgacctcccaagacaatgcacaacctgtggccttcgattc
aagtgccaagaagagcacagtcgtcatatggattggcatgtaaccaagaatcgtatgtcc
aagaaccgtaagcagaagccttctcgcaagtggtttgtaagttcaagcatgtggctcagt
ggtgcggaggcattaggaactgaagcagttcctgggtttttgcctactgagatcattgta
gagaagaaggatgatgaagaaatggctgttcctgccgacgaggatcagaatgcatgtgca
ttatgtggagagccttttgatgatttttacagtgacgagacagaagagtggatgtacaag
ggggctgtatacttaaatgcgccctgtggctcgacagcaggcatggataggtctcagtta
ggtcctatagtgcatgctaagtgtcggtctgaatctagtgcggtttctacagaaggtttt
agacaagacgaagggggaattactgcagagggtagtcagagcaaacgaatgcggcttagt
tag
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integrated database retrieval system
