Carya illinoinensis (pecan): 122275849
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Entry
122275849 CDS
T08745
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03020
RNA polymerase
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122275849
09124 Replication and repair
03420 Nucleotide excision repair
122275849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122275849
03400 DNA repair and recombination proteins [BR:
cill03400
]
122275849
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122275849
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122275849
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122275849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
122275849
NCBI-ProteinID:
XP_042941071
LinkDB
All DBs
Position
9:complement(6200817..6209794)
Genome browser
AA seq
1192 aa
AA seq
DB search
MEEDQEYDQQLSYDDDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESAEIEIRPESQHNPGHQLDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVKKRVIKKGHDGEEVTETHDFTKVFIGKVPIMLRSSYCTVYENSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS
TMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYAFADT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDV
NTEVGVVRDIRLNELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEEAGWVDL
VSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGLAARYSRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLSALIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEHCGLIAIANLKKNSF
ECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPSKDQKKKGA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaccaggagtacgaccagcagttgagctacgatgacgatgaagaggaggag
atcacccaggaggacgcctgggccgtcatctccgcatacttcgaggagaagggcctagtc
cgccagcagctagactccttcgacgagttcatccagaacacaatgcaggagatcgtggac
gagtccgccgaaatcgagattcgcccagagtcgcagcacaaccccggccatcagttggac
ttcgccgagaccatctataagatcagctttggtcagatatacttgagtaagcccatgatg
accgagtctgatggagaaacagcaaccttgtttccaaaggctgcaaggttgagaaatcta
acatactccgcccccttgtatgtggatgtcaaaaaaagagttataaagaaagggcatgat
ggtgaagaagtgacagagactcatgatttcaccaaagttttcatagggaaggttcctata
atgctccgctcgagttattgcacagtgtatgagaattcagaaaaggatttaacagagctt
ggggagtgtccatatgatcaaggtggatattttataataaatgggagcgaaaaggttctg
attgcccaagagaagatgagcactaatcatgtctatgtgttcaagaagagacagcctaac
aagtatgcctatgtggcagaagttcggtctatggcagaatctcagaacagacctcccagt
accatgtttgtgcggatgctttctcgggctagtgccaaagggggctcttcagggcagtac
attcgtgccactctgccttatattcgaacggagattccaataattattgtatttcgagca
ctggggtttgttgctgacaaagacatactagagcatatatgttatgctttcgctgatact
caaatgatggagttacttcgtccctccctggaagaagcctttgtgattcaaaatcaacag
gttgcactagactacattggaaaacgaggagcaactgttggtgtaactagggaaaagagg
atcaagtatgccaaagaaattcttcaaaaggaaatgcttcctcatgtaggtgttggagaa
ttttgcgagacaaagaaggcttactatttcggatatatcattcaccggcttctgctctgt
gcactaggccggagggctgaagatgatagggatcattatggaaacaagaggctggacctt
gctggtcccttacttggaggcctgtttagaatgctattcagaaagttaactagggatgtg
agaggttatgtgcagaagtgtgtagataatggaaaggatgttaacctccaatttgccatt
aaagcaaaaacaattaccagtggtctcaaatactcgcttgccactggaaactgggggcaa
gcaaatgcagctggtacaagggctggagtttcacaggtgttgaatcgcttaacttatgcc
tctaccttgtcacatctgagaagattaaattctcccattggacgtgaaggaaaattggcg
aaaccacgccaattgcacaattcacagtggggaatgatgtgtccagctgaaacgcctgaa
ggacaggcatgtgggctggtaaagaatcttgcattgatggtgtacataaccgttggatcg
gcagcatatccaattctggaatttttggaagaatggggtactgagaattttgaggaaatt
tctcctgcggttattccacaagctacaaaaatttttgttaatggttgctgggtcggtatt
catcgagatcccgatatgttggtgaaaacattgagacggctgaggcgaagggttgatgtt
aatactgaggttggggtggttagagatatccgattgaatgaactgcggatatatactgac
tatggccgttgcagtcgtccactattcattgtggagaagcaaaggcttctcataaagaag
aaggatatccatgcactgcagcagagggaaacccccgaggaggctggttgggttgatctt
gtttcaaagggatttattgaatatattgatacagaagaagaagagaccacaatgatttcc
atgaccataaatgatcttgtacaagctaggctcaatccagaggaggcttattctgaaact
tatacccactgtgaaatccacccatcattgattttgggtgtctgtgcttcaattattcca
tttccagaccataatcagtcccctcgtaatacttatcaatcagctatgggtaagcaagct
atgggtatttatgtgaccaactaccaatttcgaatggatacgttggcttatgttctatat
tatcctcaaaagccacttgtaacaacacgtgccatggaacatctccactttaggcagctt
cctgccggcattaatgccattgttgccattgcctgctattctggttataaccaggaagat
tctgtcataatgaaccagtcctctatagaccgtggattctttcggtcactatttttccga
tcatatcgggatgaggagaagaagatgggaactcttgtcaaagaggattttggacggcca
gacagggccaataccatgggtatgaggcatggctcttatgataagttggatgatgatggt
cttgcacctcctggtacaagagtttcaggtgaggatgtaatcattggaaagaccactccc
attgcccaggaggaggctcagggactagctgcacgatattcacggcgtgatcatagcatc
agtcttcgtcacagtgaaactggaattgtggatcaagttctactgacaacaaatgctgat
gggctgaggtttgtgaaagtaagggtgagatccgttcgaattcctcaaattggggataaa
tttagtagtcggcatgggcaaaagggaacagtaggcatgacatatactcaagaagacatg
ccgtggaccatggaagggatcacccctgatatcattgttaatccacatgctattccttca
cgtatgacaattggccagctgattgagtgtatcatgggaaaggttgcagctcacatggga
aaggaaggagatgctactcctttcacagatgttactgtggacaatatcagcaaagctctt
cacaaatgtggctatcaaatgcgtggctttgagactatgtacaacggtcacacaggtcga
cgtctcagtgctttgatattccttggccccacttactaccaaagattgaaacacatggtc
gatgacaagatccattcacgtgggcgtggccctgttcagatcttgacaaggcagccagct
gagggacggtcccgtgatggtggtcttcgatttggagaaatggaacgagattgcatgatt
gcccatggtgctgctcactttctcaaagagaggttgtttgatcagagtgatgcataccga
atccatgtttgtgaacattgtggtttgatagccattgcaaacttgaagaagaattctttt
gagtgcagaggctgcaagaataaaacagacattgttcaggttcacattccttatgcctgt
aagctactcttccaagaacttatgtctatggctatagcaccaagaatgctcacaaaagaa
gtcaaaccctccaaagaccaaaagaagaaaggagcctga
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