Carya illinoinensis (pecan): 122276097
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Entry
122276097 CDS
T08745
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122276097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122276097
03009 Ribosome biogenesis [BR:
cill03009
]
122276097
04131 Membrane trafficking [BR:
cill04131
]
122276097
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cill04147
]
122276097
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122276097
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122276097
Membrane trafficking [BR:
cill04131
]
SNARE
SNARE associated proteins
Others
122276097
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122276097
Exosome [BR:
cill04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122276097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
Vps4_C
AAA_7
NB-ARC
AAA_24
TsaE
AAA_lid_PRS2_C
DUF815
Zeta_toxin
Sigma54_activat
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
122276097
NCBI-ProteinID:
XP_042941495
LinkDB
All DBs
Position
9:33554877..33560625
Genome browser
AA seq
806 aa
AA seq
DB search
MANQAESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVTLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADEACDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQI
FKSCLRKSPVSKGVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRGREN
PEAMEEDIEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
NPSTGAAASDPFATTAAGADDDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcaagcggaatcttctgactctaagggaacgaagagggactttagcacggcg
atcctggagcgcaagaaggccccgaatcggcttgttgtggacgaggcaatcaacgatgac
aactcggtcgtcacgctccacccagataccatggaaaagctccagctgtttcggggcgac
acgatcctgatcaaggggaagaaaaggaaagataccatctgcattgctcttgctgatgaa
gcatgcgatgaaccaaagataaggatgaacaaggttgtgagaagcaacctgagggttagg
ctaggagatgtcgtttctgtccaccagtgtgcagatgtcaaatatggaaagcgtgtgcac
atacttcccgttgatgataccattgaaggggtcaccggaaatctatttgatgcgtatttg
aaaccttatttcttggaggcataccgcccagtgaggaagggtgatttatttcttgtcaga
gggggaatgagaagtgtagagttcaaggttattgagactgacccaccagagtactgtgtg
gttgccccagacacagagatcttctgtgagggagaacctgtgagaagggaggatgagaat
agattggatgaagttggttatgatgatgttggtggtgttaggaaacagatggcacagatt
cgtgaattagtggagctgcccctaaggcatccacaactatttaaatcgataggtgtcaag
ccaccaaaaggaattctgttgtatggcccccctgggtctgggaagactctaattgcccgg
gctgttgccaatgaaactggtgccttctttttctgcatcaacgggccagagatcatgtca
aaattggctggggaaagtgagagcaacctcaggaaagcatttgaggaagctgagaagaat
gcaccatccatcattttcattgatgagattgactctattgctcccaagcgagagaagact
catggagaagttgagaggagaattgtttctcagctcttgacacttatggatgggttgaaa
tctcgtgcacatgttattgtcattggggctacaaatcgtcccaatagcattgaccctgct
ttgagaaggtttggaagatttgacagggaaatagatattggtgtcccggatgaagttgga
cgccttgaggttctccgtatccatacaaagaacatgaagcttgctgaagatgttgattta
gaaagaattgctaaggatacccatggttatgttggtgctgatctagcagctctatgtact
gaggccgcacttcaatgcatcagagaaaagatggatgtgattgacttggaagatgagaca
atcgatgcggagatacttaattcaatggccgttacaaatgagcacttccaaacagctctt
ggtacaagcaacccatctgctctccgtgaaactgttgttgaagtgcccaatgtcagttgg
gaggatattggaggtctcgagaatgttaagagggaacttcaagagactgttcaataccca
gtggagcatcctgagaaatttgagaagtttggaatgtcaccatccaagggagttcttttc
tatggccctcctggatgtgggaaaacgctgctggccaaagctattgctaatgaatgccag
gcaaactttatcagtgtcaagggtcctgagttgcttacgatgtggtttggtgagagtgaa
gccaatgtacgtgaaatattcgacaaggcccgccaatctgctccttgtgttctatttttt
gatgaacttgactcaattgctactcagagaggtagcagtgtaggagatgctgggggtgct
gctgatagggttttgaaccaactcttgacagaaatggatggcatgtctgcaaagaaaact
gtattcatcattggggccaccaacagacctgatattatagatcctgcactcctgcgacct
ggtcgtcttgatcagttgatctacatccctctccccgatgaggagtcccggttccaaata
tttaagtcttgcttgaggaaatctccagtttccaaaggtgttgatctcagagctcttgcc
aagtatactcaaggctttagcggtgctgatattacagagatatgccagcgtgcatgcaaa
tatgctataagagagaacattgagaaagatattgagagggaaaggaggggaagagagaat
cctgaggcaatggaggaggatattgaggatgaagtggcagagattaaggcagcccatttt
gaggaatcaatgaagtatgctcggaggagtgtgagtgatgctgacattcgcaaataccag
gcatttgctcaaacattgcagcaatcaagagggtttggatctgagtttaggtttgccgat
aacccttctactggggctgctgcatctgaccctttcgcaactactgctgctggcgcagac
gatgatgacctttacagttag
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