Carya illinoinensis (pecan): 122276131
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Entry
122276131 CDS
T08745
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122276131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122276131
03012 Translation factors [BR:
cill03012
]
122276131
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122276131
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122276131
Translation factors [BR:
cill03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122276131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
BEX
T2SSE
AAA_19
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
122276131
NCBI-ProteinID:
XP_042941558
LinkDB
All DBs
Position
9:complement(2283585..2298401)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSPHSFGVNYRCYHILSKLLFLVPRLSISSRLQISALPMSHRPNFQGGRRGGPNSGRRGG
GRRGGGGGGRGGGRGEQRWWDPAWRAERLRQNEAEMEVLDENEWWSKMEQMKRGGEQEMI
IKHNYSRADQQTLFDMAYQLGLYFHAYNKGKALVVSKVPLPDYRTDLDERHGSTQKEIRM
SSDIERRVGSLLNSSESQQAVPINDSSGTPARAGNKSSAGGNVGKSDSLLDIDSAKEKFS
LELKQRQENMKASNSLRAMLSFREKLPAFKVKSEFLKAVAENQVLVVSGETGCGKTTQLP
QFILEDEIFCLRGADCSIMCTQPRRISAISVAARIASERGESLGETVGYQIRLEAKRSAQ
TRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLLIILNDLLPRRPDLRLIL
MSATINADLFSKYFGNAPIIHILELTFPVAEFFLEDVLEKTRYNIKSEFDNVEGNSRRRR
QQDSKKDPLMELFEDVNIDSYYKNFSTSTRKSLEAWSGSQLDLGLVEATIEYICRHEGDG
AILVFLMGWDDISKLLDKVKGNSFLGDPSKFLVLPLHGSMPTLNQREIFDRPPPNKRKIV
LATNIAESSITIDDVVHVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GICYRLYPKMIHDAMVQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDTLAVQ
NAIELLKTIGAVDDMEELTPLGCHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHR
DPFILPINRKEEADAAKRYFAGDSCSDHIALLKAFEGWKDAKRKGKERAFCWANFLSPVT
LQMMEDMRMQFLDLLSDIGFVDKSRGPNAYNQYSHDLEMVCAILCAGLYPNVVQCQRRGK
RTAFYTKEVGKVDIHPASVNAGVHQFPLPYMVYSEKVKTTSIYVRDSTNISDYALLLFGG
NLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNKKIEEPGFDISMEGKGVV
AAAVELLHSHNV
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcactcattcggtgttaactaccgctgctaccacatcctttccaaactcctt
ttcctcgtgccgcgactttcaatctcttctcggcttcaaatctctgctcttcccatgtct
caccggcccaatttccaaggcggtcgccggggaggccccaactccgggagaagaggtgga
ggccgccgtggtggtggcggaggaggccgcggtgggggacgcggggagcagcggtggtgg
gaccctgcctggcgagctgagcgcctgagacagaatgaagccgagatggaagttcttgat
gagaatgaatggtggagtaagatggagcagatgaaaagaggaggggagcaggagatgata
attaagcataattacagtcgtgcggaccagcaaaccctatttgacatggcttatcagctg
gggctttacttccatgcatacaataaagggaaggctcttgttgtcagcaaagttccattg
ccagattacaggacagatcttgatgaacgtcatggatccacacagaaagagatccgaatg
tcctcagatattgagaggagagttggcagtcttttgaatagttcagagtctcagcaggca
gtgcctattaatgattcttctgggacacccgctcgagcaggcaataaatcatcagctggt
ggcaatgtaggaaagtctgactctttgttggatattgattctgctaaggagaagttcagt
ctcgaacttaagcaaaggcaagaaaacatgaaggcaagtaattctttaagggcaatgcta
tcattcagagaaaagcttcctgcattcaaagtgaaatctgagtttctgaaagctgttgca
gaaaaccaggtattggtagtttcaggggagacaggctgtggcaaaacaactcagctccct
cagtttattctagaagatgaaatattctgtctgcgtggtgctgattgcagcataatgtgc
acccaaccccgtcgtatatcagctatttctgttgcagctcgtatagcttccgaaaggggg
gagagtcttggtgaaactgttggctatcagatccgcctagaggcaaagcgctctgctcaa
acacggttgctattttgtaccactggagtattacttcgacagttggttcaggatccagag
ttaactggtgtgagccatctgctagtggatgaaatccatgaaagaggcatgaatgaagac
tttttattaataattctgaatgaccttcttcctcgccgtccagatttacgtcttattcta
atgagtgctaccatcaatgccgacttgttctccaaatattttgggaatgccccaattata
catatactggaattgactttccctgtggctgagtttttcctagaggatgtgttggagaaa
actcgttataatatcaagtcagagtttgacaacgttgaggggaattcgaggagaaggaga
cagcaagattctaagaaggatcctttaatggaattatttgaggatgttaatattgattct
tactacaaaaattttagtacatctacaagaaagtctcttgaagcttggtctggttcacag
cttgatttgggcctggtggaagcaacaattgaatatatttgtcgccatgaaggtgatgga
gctattcttgtattccttatgggctgggacgacatttccaagttacttgacaaagttaaa
ggaaacagcttccttggtgatcccagcaagtttcttgtccttcccctacatggttcaatg
cccacccttaaccaacgtgagatatttgatcgccctccccctaacaagaggaaaattgtg
ctggcaacaaatattgcagaaagtagtatcactatagatgatgttgtgcatgtcatagac
tgtggaaaggcaaaggaaactagttatgatgctctgaacaaactggcttgtctgttacca
tcatggatatctaaggcttctgcgcatcagagaagaggtcgtgctggccgtgtgcaacct
ggaatttgttatagactgtatcccaaaatgatccatgatgcaatggttcagtatcagttg
cctgaaattctcagaacacctttgcaagagctctgcctgcatatcaaaagtttgcagctt
ggaactgttggatcatttttggcaaaagcacttcagccaccagatactcttgctgtgcaa
aatgcaattgaacttcttaaaacaattggagccgtagatgatatggaggagcttacgcca
cttggttgccatctttgcactctaccgttggacccaaatatcgggaagatgcttcttatg
ggatctatctttcaatgcctcaatcctgccttaacaattgcagctgcacttgcacatcgt
gacccatttatcctaccaataaataggaaagaggaagctgatgcagcaaaaagatacttt
gctggtgattcttgcagtgaccacatagcacttcttaaagcttttgaaggatggaaggat
gcaaaacgtaaaggaaaggaaagagcattctgttgggctaacttcttatccccagtaacc
ttgcagatgatggaggatatgagaatgcagtttctagatctattatcagacattggtttt
gtagacaaatcaaggggtcctaatgcttacaatcaatacagccatgatttagagatggtc
tgtgcaatcctttgtgctggactctacccaaacgtagtgcagtgccaaagaagaggaaag
cgaacggcattctacactaaagaagtcgggaaagttgacatccatcctgcatctgtcaat
gcaggggttcatcaattccctctgccttacatggtttacagtgaaaaagtgaaaacgacc
agtatctatgtccgagattccacaaatatatcagattatgctctacttcttttcggtggt
aatctcatccctagcaaaactggggagggcattgagatgcttggtggttacctacatttc
tctgcatcaaaaagcgttctagagttaatacggaaattgcgtggtgaactcgataagctt
ctgaataaaaagatcgaggaaccagggtttgacatttctatggagggaaaaggagtagtt
gctgctgcggttgaattattgcacagtcacaacgtatga
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