Carya illinoinensis (pecan): 122276188
Help
Entry
122276188 CDS
T08745
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122276188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122276188
03019 Messenger RNA biogenesis [BR:
cill03019
]
122276188
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122276188
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122276188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
122276188
NCBI-ProteinID:
XP_042941686
LinkDB
All DBs
Position
9:complement(13469203..13484742)
Genome browser
AA seq
704 aa
AA seq
DB search
MEDSEGVLNFDFEGGLDAGPTANAAVAPGPHVVQSDSSVGAAAANAASAGPGTAAFVADS
ASAGGNLASGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQD
CVYKHTNEDIKECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYNSSS
RFFQQRNGNFPQQAEKSQFPHGPNTANQGVVKPSTNESSNVQQQQQSQQQVSQNQTPNIP
NGLPNQTNRTAIPLPKGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMTSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHNT
RHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAISLAAESKREEEKAKG
VDPDNRGENPDIVPFEDNEEEEEEESEEEEESFSQIPGAAMQGRGRGRGIMWPPHMPVAR
GARPMPGTQGFPPVIMGADGLSYGPITPDRFPMPDIFGVGPRAFAPYGPRFSGDFTGPNS
GMMFRPQPSQPFPAGGFGMMMGPGRAPFMGVMGVAGANPTRPGRPVGMPQMFPPPPPPSS
QNINRVMKRDQRVNDRNDRYNTGSEQGKGQEMPSPGFGPDDETRFQHGFKAHHEDHYGGG
NNFKNDESESEDEAPRRSRHGEGRKKRRGSEGDTTTGSDHLQMP
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggagggggttctcaacttcgacttcgagggcggtctagacgccggtccc
actgccaacgccgccgtcgccccggggccccacgtcgtccaatctgattcctccgtcgga
gcagcggccgccaacgcggcgtccgcgggccccgggactgcagcattcgtagctgactcc
gcctccgcgggtggcaacctcgcctcggggaggcgaagcttccgtcagacggtgtgccga
cactggctccgaagcctctgcatgaaaggcgacgcctgcggcttcctccaccagtacgac
aagtcacggatgcccgtctgccgcttcttccggctctacggtgagtgccgcgagcaggac
tgcgtgtacaagcacaccaatgaagatatcaaggagtgtaacatgtacaggttgggcttt
tgtccaaatggtcccgactgtcggtacaggcatgcaaaactgcctggacctccacctcct
gtagaagaggtccttcagaagattcagcaattaaattcttacaactacaactcttctagc
agatttttccagcaaaggaatggtaatttccctcaacaagcagaaaagtctcagtttcca
cacggtcccaacactgccaatcaaggcgtggttaaaccttcaacaaatgagtcttctaat
gtccagcagcagcaacagtcccagcagcaggtcagccagaaccagacaccaaatattcca
aatggcctgcccaatcaaacgaacagaactgctatacctttgcctaaaggaatatctagg
tattttattgttaaaagttgcaaccgtgaaaatttggaattatctgtacaacaaggagta
tgggcaactcaaaggagcaatgaagctaaactgaacgaagcttttgactctgctgaaaat
gtgattctgattttttctgtcaaccggacccggcatttccagggttgtgcaaagatgaca
tcaagaattggtggatctgttggtgggggcaattggaaatatgcacatggaaccgcacat
tatgggcggaatttttcagtgaaatggttaaagttatgtgaattgtccttccacaacact
cgccatctgcggaatccgttcaatgagaacttaccagtcaagataagtagagactgtcag
gagctagagccttctgttggtgagcagttagcttccttgctttatcttgaaccggatggt
gaacttatggcaatttcacttgcagctgaatcaaaacgagaggaggagaaagcaaaggga
gtcgatcctgacaacagaggagagaacccagatattgtcccattcgaggacaatgaagag
gaggaagaggaagaaagtgaagaagaggaggagagcttcagccagattcctggggcagca
atgcagggtagagggaggggcaggggaatcatgtggccccctcacatgccggtagcacgt
ggagccagacctatgcctgggacacagggttttccccctgttataatgggagctgatgga
ttatcttatggacctattacacctgatcggtttccaatgcccgatatttttggggttggc
ccccgtgcttttgcaccgtatggtccacgattctccggtgattttacaggtcccaactct
ggcatgatgtttcgtccacaaccttctcaacctttcccagcgggtggatttgggatgatg
atggggccagggcgtgccccctttatgggagtgatgggggtcgcaggtgcaaatccaact
cggcctggccggcctgttggcatgcctcaaatgtttccaccacccccaccaccatcctct
caaaatatcaaccgggttatgaagagagatcagagggtgaatgatcggaatgacaggtat
aatacaggttcagagcaaggcaagggtcaagagatgcctagtcctggttttggaccagat
gatgagacacggtttcagcatggattcaaggctcaccatgaagatcattatggtggcggt
aataacttcaaaaatgatgagagcgaaagtgaggatgaggcacctaggcggtcaaggcat
ggggaggggaggaagaagcggcgaggctcagaaggagatactaccacaggttccgatcac
ttacagatgccatga
DBGET
integrated database retrieval system
