Carya illinoinensis (pecan): 122276424
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Entry
122276424 CDS
T08745
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122276424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122276424
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122276424
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122276424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
122276424
NCBI-ProteinID:
XP_042942051
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All DBs
Position
9:166448..200875
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AA seq
896 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDGIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVRDFLEDYVDRNQEDFDEFSDVDDLYNTLPLDKVES
LEDLVVIGPPSLVKQGAPVLSLKTSLVASASQIPATVASNQQQGTVQEQVEDTVSQDGNS
DTVPRTPPPKNSVIGLSAASTPVGSLATSNVSAHNLSGVSGASTSLPGSGSVRAVPENIG
PVHFSSPLSLSNSAKEEDSLPGRRSSPSLSDTGLVRGIGRGGLSSQPSASISLSSSNVVP
SNGTIGAVPSTSEMAKRNVLGADDRLGSGMVQPLVSPLSNRMILPQVAKANDGTAAIDSS
NVIEPTTLAGRVFSPPIVPSMQWRPGSAFQNQNEAGQFRGRTEIAPDQREKFLQRLQQVQ
QQGHSTLLSMPPLSGTSHKQFSAQQQNPLLQQLNSQSTSVSSQAGLGLGVQAPGLNNVTS
AALQQQPNSILQQSNQQPLMSGGPKDADVGHAKVEEQQQQQNLPDDSTIDTTTGSGLGKN
LMNEDDLKASYALDTPPGSSDSLTEPILIPRDIDLSPGQPLQSNQPSGSLGVIGRRSVSD
LGAIGDNLSGSTLNSGGMHDQSYNLKMLEAAYFKLPQPKDSERARSYTPRHPAITPPSYP
QVQAPIVNNPAFWERLGLEVNGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW
FQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELVA
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagccgtaagcttcagggagagatcgatcgggttctcaagaaggtccaagaa
ggcgttgatgttttcgacggtatctggaacaaggtttatgatacggacaatgcgaatcag
aaagagaagttcgaggcggacttgaagaaggagatcaagaagcttcagaggtacagggac
caaatcaagacctggattcagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctggtggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatc
tgtgaaaaggagactaagacaaaagcattctctaaagaaggactgggccagcaacctaaa
actgacccaaaggagaaggctaaatcagagacaagggattggttgaacaatgtggttggg
gagttggagtctcagatcgataactttgaagctgagattgaggggctatctgttaagaag
ggcaagactagaccaccaagactgacacatttagagacctctatcacccggcacaaggct
catataatgaagttggaactgatcttgaggctgctggataatgatgaactgagtcccgag
caggttaatgatgttagagactttttggaagactatgtggaccgcaatcaggaggatttt
gatgaatttagtgatgttgatgacctttacaacacactaccattagacaaggtggagtct
cttgaagatttggttgtgattggtcctcccagtcttgtgaagcagggggcacctgttctt
agcttgaagacgtctttggtggcatcagcatctcaaattcctgccaccgttgcttctaat
caacagcagggcactgttcaggaacaagttgaagatacagtttcccaggatggtaattct
gatactgttcccagaactccacctcccaaaaatagtgtaattggtttgtctgctgcctca
acaccagtcgggagtcttgcaacctcgaatgtttctgctcacaatttgtctggggtctct
ggtgcttcaactagccttccaggttcaggttctgtgcgagccgtcccagagaacattggt
cctgttcatttttcctctcctttgagcctgtctaattctgcaaaggaagaagatagtctt
cctggccgtagatcatctccatcactttctgatactggactcgtaaggggaattggtaga
ggtggcctctccagccaaccatcagctagcatctctcttagttctagcaatgtagttcct
agcaatggaactattggtgcagtcccttcaacctctgaaatggcaaagagaaacgtttta
ggagctgatgacagacttggtagtggtatggtccagcctctggtttcccctctaagtaac
agaatgattttacctcaggttgccaaagcaaatgatggaactgctgcaatagattctagt
aatgttattgagcctacgactctggctggcagagttttttcacctcctattgtccccagt
atgcagtggaggcctggaagtgcctttcagaatcagaatgaagcgggacaatttcgtggg
agaactgagattgctcctgatcagagggagaaatttttgcaacggctccaacaagtgcag
caacaaggtcatagtacccttcttagtatgccgcccctttctggaacaagtcataagcag
ttttctgcacaacagcaaaaccccctcttgcagcagcttaattctcaaagcacatctgtc
tcttctcaagctggtctgggacttggagtccaggcaccgggtctcaataatgttacatct
gctgccttacagcagcagccaaattccatccttcaacagtctaatcaacaaccattgatg
tcaggcggtccaaaagatgctgatgtcggtcatgcaaaagttgaggagcagcagcagcaa
cagaatttacctgatgattcaactattgacactaccactggttctgggcttggaaagaat
ctcatgaatgaggatgatttgaaagcctcttatgcgttagatactcctccaggttcatct
gattctttgactgagcctattctaatccctagagatattgatctctctcctgggcaacct
ttacaatcaaatcaaccttctgggagccttggtgttattggccgaagaagtgtttctgac
cttggtgccattggtgataacctcagcggatcaactctgaattctgggggaatgcatgat
cagtcatacaatttgaagatgcttgaggctgcatattttaaactccctcaacccaaggat
tctgaacgtgcaagaagttatactccgaggcatccagcaattactcctcctagctatcct
caagtacaggcgcctattgttaataatcctgccttctgggaaagactcggtctggaggtt
aatggcaccgataccctgttctttgcattttactatcagcagaacacttaccaacaatat
ttggctgcaaaagagttgaagaagcaatcatggagataccacagaaaatacaacacatgg
tttcaaaggcacgaggagccaaaagttgccacagatgaatttgaacaggggacgtatgta
tacttcgattttcatattgccaatgatgacctgcagcatggatggtgtcagaggatcaag
acagaattcacttttgagtacaactatcttgaagatgaacttgttgcatag
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