Carya illinoinensis (pecan): 122276455
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Entry
122276455 CDS
T08745
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
cill04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122276455
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122276455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122276455
04121 Ubiquitin system [BR:
cill04121
]
122276455
03400 DNA repair and recombination proteins [BR:
cill03400
]
122276455
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122276455
Spliceosome [BR:
cill03041
]
Complex B
Other components
Prp19 complex
122276455
Complex C
Prp19-CDC5 complex
122276455
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
U-box type E3
122276455
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
122276455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_EIPR1
PEP5_VPS11_N
zf-Nse
U-box
PAS_11
Tricorn_2nd
Beta-prop_DCAF12
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
122276455
NCBI-ProteinID:
XP_042942120
LinkDB
All DBs
Position
1:complement(43912942..43934189)
Genome browser
AA seq
569 aa
AA seq
DB search
MVFSVSWLFLVYKNHFSFNFFSLSCSLLSFRAGQARSETLALSPTMNCSISGEVPEEPVV
SKKSGLLYEKRLIERHISDYGKCPITGEPLTLDDIVSINTGKIVKPRPLQAASIPGMLGM
FQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQADRQ
IPMSTSVAVTANTPSISNGKRAAEDEKLGPGGKRMRPGISAGIIAELTDCNASLSQQRKK
RQIPPTVATIDALESYTQISSHPLHKTSKPGIASLDILYEKDIIATGGLDTNAVLFDRPS
GQILSTLSGHSKKVTSLKFVARGDLFLTASADKTVRVWQESDDGNYNCRHILKDHTAEVQ
AITVHATNNYFVTASLDSTWCFYELSSGLCLTQVVDASDSNGYTSAAFHPDGLILGTGTS
EAVVKIWDVKSQANVARFDGHVGAVTSISFSENGYFLATAAHDGVKLWDLRKLRNFRTFA
PYDSDTPTNSVEFDNSGCYLAIAGSDIRVYQVANVKSEWNCIKTIPDLSGTGKATCARFG
PDAKYMAVGSMDRNLRIFGLPGEDGPLES
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggttttttctgtttcttggctattcctagtctacaaaaaccacttctctttcaatttc
ttctctctttcttgttcactcctctcatttcgggcaggacaggctcggagcgaaacccta
gctctctcacctacaatgaactgctcaatctccggcgaagtgccggaagagcccgtggtt
tccaagaaatctgggctgctctacgagaagcggttaatcgagaggcacatctccgattat
ggaaaatgcccaattacgggggaaccactgacgctggatgatattgtttcaatcaataca
ggcaagatagtgaagcccaggcctctacaggctgcaagcatacccggcatgcttggaatg
ttccaaaatgaatgggatggtctgatgctgtccaattttgctttggaacaacaactgcat
acagcaagacaagagctaagtcatgcactgtaccagcatgatgctgcttgccgcgtgatt
gctagacttaaaaaagaaagggatgaagcaaggtcattacttgctcaggctgatcggcag
atacccatgtcaacatcagtggcagttacagcaaatactccttcaattagcaatggtaaa
agagctgctgaggatgaaaagttgggccctggtggaaagagaatgcgtcctggaatatct
gctggtataattgctgagctaactgactgtaatgcgtctctctcacaacagcgtaaaaaa
cggcagatacctccaacagtggctaccattgatgctctagagagttatactcagatttct
agtcatccacttcacaaaactagcaaaccaggcattgcatctcttgatatcctttatgaa
aaggacataattgcaactggagggctggacacaaatgctgtactttttgatcgaccatca
ggacagatcttatctacgctcagtggtcattccaaaaaggttaccagtctaaaatttgtt
gctcggggtgatttattcttaactgcctcagcagacaagactgtgcgtgtgtggcaagag
tctgatgatgggaactataactgtaggcacatcttgaaggatcatactgccgaggtgcaa
gctattaccgtccatgcgacgaataactactttgtgactgcttctcttgatagcacatgg
tgcttttacgagctttcttctggattatgtctcacacaggtagtggatgcctcagattct
aacggctatacatctgcagcatttcatcctgatggcctaattcttggaacaggcacttca
gaagctgttgttaaaatttgggatgtgaaaagtcaggcaaatgttgccagatttgatgga
catgttggggctgtaacttccatatctttctctgaaaatggctacttcctagcaactgca
gctcatgatggtgttaagctgtgggatctacgtaaattaaggaacttccgtacatttgca
ccatatgattcagataccccaacaaactcggtggagtttgacaatagtggatgttacctt
gcaatcgctggatcagatataagagtttaccaagttgcaaatgttaaatcagaatggaat
tgtatcaagaccatacctgatttatctggcacaggtaaagcaacttgtgctagatttggg
ccggatgcaaaatatatggcagttggatcaatggatagaaacctccgcatttttggcctg
cctggtgaggatggtccattagaatcatag
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integrated database retrieval system
