Carya illinoinensis (pecan): 122276539
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Entry
122276539 CDS
T08745
Name
(RefSeq) protein CHROMATIN REMODELING 4-like isoform X1
Organism
cill
Carya illinoinensis (pecan)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
HDA2-3
ResIII
PHD
DUF1087
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
122276539
NCBI-ProteinID:
XP_042942283
LinkDB
All DBs
Position
9:complement(7931771..7962367)
Genome browser
AA seq
2347 aa
AA seq
DB search
MKENGSSTSKMINRNWVLKRKRRKLPCGTVLANSKEDSLLVSESPKNTSLVKRELQSEIK
SERFSSKKKGNDGYYFECVVCDLGGNLLCCDSCPQTYHLQCLNPPLKRIPMGKWQCPKCC
QKSDPLKPISQPDTISKRARTKMVTGKSKSGMQSSDINKVSRIFGSSIIAKKRSSSKGKS
VRLLEQKPVSSRIDVSYSTKPSHQSLALLEGGSSCVNVDDEDKSNISPMDSPADRKSTSP
AKEISSHSKVTNPETTDEDPEGKPDLSGNNKSPEKTLILAISAATMEHRKRKQKVNDNNS
QKKRRTDKGKFKVSTSKKRGSKASNASPGTSKSHQKRKSVNNGVSTALLKEGIGTKILDV
RRKDEKLPQEATKLSHELNKADNVNRAVISGESIPTEPLQVDRVLGCRVRGDYFGSSHQL
SVSVTDDLHSDVLLISENQNRVLEDNSVCDTDLDVATGENLGDQNIVVSLDKEGSVKTEM
KVDKMHVYRRSATRECKKGQNMRFLQKDVKDSDSSAADKDHDEVITEDLEKPNEKMVTET
NTSANLRDPDNDEVPKICETHVSNETKDDKRADLEMEIKSSVENKIQEATQAETACIDQD
TVLYEFLIKWVGKSHIHNSWISESELKVLAKRKLENYKAKYGIAVINICEEHWKQPQRVI
ALCNFKDGRHEAFVKWTGLPYDECTWETLDEPALQKCLHLIDLFNQFECQTLEKDSSKDA
SPRRKGDCQQNEIVTLPEQPKELKGGSLFPHQLEALNWLRKCWHKSKNVILADEMGLGKT
VSACAFISSLYCEFKATLPCLVLVPLSTMPNWLAEFSLWAPNLNVVEYHGCAKARAIIRQ
YEWHACDPSDLNKKTAAYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSGSKL
FSMLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEERFNDLTTAEKVEE
LKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNVGKGVP
QQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKILYKEGH
RVLIFSQMTKLLDILEDYLTIEFGSKTYERVDGSVSVADRQSAIARFNQDKSRFVFLLST
RSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ
LAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFNDSYSMYGKDTVEFNNNKDEAVIDTE
NKHRKRAGSLGDVYQDKCTESSSRIMWDENAILKLLDRSNLQSGSTDNAEGDLESDMLGS
VKALEWNDEPTEEQGGAESPPIVTDEIFAQSSERKEDNVVAGMEENEWDRLLRLRWEKYQ
VEEEAALGRGKRQRKAVSYREAYASHPSETLTESCGDEERELEPEPEREYTPAGRALKAK
FAKLRARQKERLAQRNAGLESCLGGGMPEPDSVPNHPSINSKEGDVTELHQAVSEKISVI
DLEDDKFIQPVDGPKCKNDIPLRLGRMSKYKMSSHLDFPFNPLGHPSPDIFLPSHHFQST
SYTNSVPTSNLLPVLGLCAPNVSQVEPSYRNLLRANGRQSKLGPGPEFPFSLASCFRTSI
ETDGKNQDSLDKAKKPDATAEVLQQCLKNSIPDNCPPYLPCPPAVQGKASERLESCGSTF
SDFQEKMALPNLPFDENMLSRFSLSAKTAPPSHLDYLPSLSLGSRPETVNGFMQDFPTIP
LLPSLKFPAQDAVRYNQDREMPPTLDLGQMPATFSSFPEKHKKVLESIMMRTGSGSSNMF
RKKLKKESWSEDELDFLWIGVRRHGRGNWESMIRDPRLKFSKYKTSEDLSARWEKEQLKL
FDGSVFPVPKSTKPTKSTRSSLFPGISDGMMARALQGSRLTTPPKFKAHLTDMKLGFGDL
MPSVPHFETSDRLGLQNDHFVSMPTWNHEKYWANHPGESSAGPCEGLGTSSNVPIDKPFL
LNSYGTSCLGSLGLNCSTSFDVQIKEDEQCANKYGKFPSLLDKSLNVLRDSHHNLGVGES
VSSVLLPDSNKRLNLSHLKGEEAAGCSSSKDKLPHWLREAVSAPAKPPDPDLPPTVSAIA
HSVRLLYGEDKPTIPPFVIPAPPPSIPKDPRRTLKKKKKRSSHLSRRVPPDIAERSQEFQ
RNLHGDNAGSSSISLAPTFSLHPESTMGTTALPQIESDLNLRPLNLNMMNSSSSLAHLHQ
QKKTSMGLSPSPEVLQLVASCVAPVPHMSSISGMTSSSFIDSKLEVSKSVDLVGFPDPQD
AFEKGKAEQSSPFNVWRSNPGEKLQDHPESGDSSKTQSDPLRTERPDGEDISSEGTVSDH
PVSDHES
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaaacggttcatcaactagtaaaatgattaacagaaactgggtcttgaagcgc
aaacggagaaagctaccttgtggaacagttctagccaacagtaaagaagatagtttgttg
gtatcagaatccccaaagaatacttctttggttaaacgcgagctacagagtgaaattaaa
tctgagcgattttcatccaagaagaaagggaatgatgggtattactttgaatgcgttgtc
tgtgatcttggcggcaacttgttgtgttgtgatagttgtccccagacctatcatctccag
tgcctcaatccacctctcaagcgcataccaatgggaaagtggcaatgtccaaagtgctgt
cagaaaagtgatcctttaaagcccataagccaacctgataccatttcaaaacgggcaaga
acaaaaatggtcactggaaaatcaaaaagtggaatgcaatcatctgacattaacaaagta
tcccggatttttggaagctccattattgcgaagaaaagatcctccagcaaaggaaaatct
gtcagactccttgaacagaaacctgtctcttcccgaatagatgtatcctatagcaccaag
ccaagtcatcaatcccttgctcttctagaaggtggttcatcatgtgtgaatgttgatgat
gaggataaatctaatatatctcctatggactctcctgcagacaggaagtcaacctctcct
gctaaggaaatttcatctcattcaaaagttacaaatccagaaacaactgatgaagatcct
gaggggaagcctgatttgtctggtaacaataagtctcctgaaaaaacacttattcttgca
ataagtgctgctaccatggaacatagaaaaagaaaacagaaagtcaatgataataacagc
caaaagaaacgtaggactgataagggaaaatttaaagttagcacatctaagaaacgtgga
tccaaagcaagtaatgcaagccctggaactagtaaatcacatcagaagcgcaagtctgtt
aacaatggggtttccactgctttgttaaaggaaggtattggaacaaagatcttagatgtg
cggaggaaagatgagaaacttcctcaggaagcaactaaactgtcacatgaattaaacaag
gcagataatgtgaacagagcagtaatttctggagaaagcatccccactgaacctttgcag
gttgatcgggttcttgggtgtcgagttcgaggtgattattttggttcttcacatcaatta
tctgtgtctgttactgacgacctacattctgatgtcttactaatttcagaaaaccaaaac
agagtattggaagataattctgtttgtgatactgatttagatgtagcaactggggaaaat
cttggtgaccagaatattgttgtgagtcttgataaggaaggaagtgtgaagactgaaatg
aaagtggataaaatgcatgtatacagaagatctgcaaccagagaatgtaaaaaagggcaa
aacatgagatttttacaaaaggacgtcaaagattcagattctagtgctgcagataaagat
catgatgaagtaattacagaagatttggaaaaaccaaatgaaaagatggttacagagacg
aatacatcagctaatttgagagatcctgacaatgatgaagttccaaaaatttgtgaaaca
catgtatccaatgaaaccaaagatgacaaacgagctgatttagaaatggaaataaaaagt
tctgtggagaacaaaattcaggaggccacacaggctgaaactgcatgcattgatcaagat
acggtattgtatgagtttttaattaagtgggtagggaagtctcatattcacaatagttgg
atttctgaatctgagctcaaagttctggcaaagagaaaattagaaaattacaaggcaaaa
tatgggatagctgtaataaacatctgtgaggaacactggaagcagccccagcgggtgatt
gctctctgtaattttaaagatggtaggcatgaagcttttgtaaaatggacgggcctccct
tatgacgaatgcacttgggaaacattggatgaacctgctcttcaaaaatgtttgcacctg
attgatctgtttaaccaattcgaatgccaaacattggagaaagattcttctaaggatgct
tcaccaagacgaaagggtgattgtcaacaaaatgaaatagttaccctcccagagcaacct
aaggaactaaaaggaggttctttgtttccccatcaacttgaagcgctcaattggttgcgt
aaatgctggcataaatccaagaatgtgatacttgctgatgaaatggggcttggaaaaaca
gtatctgcttgtgcttttatttcatctctgtattgtgagttcaaagctactctgccttgt
ttagtgttggtcccgctttccacaatgcctaactggcttgctgaattttcattgtgggcc
cccaacttgaatgttgtggagtatcatggatgtgcaaaagcaagagccataattcgccaa
tatgagtggcatgcttgtgatccaagtgacttgaataagaaaacagctgcctataaattt
aatgttcttttaactacatatgagatggttcttgctgattcctctcatttgcgtggagtt
ccttgggaagttcttgtggttgatgaaggccaccgtctgaagaattctggaagtaagctt
tttagcatgctcaatacgttctcgtttcaacatcgtgtactgttgactggtacacctctt
caaaacaatatcggtgagatgtataacttgcttaacttcttgcagccagcttcgtttcct
tctctttcttcatttgaagagaggtttaatgatcttacaactgcggaaaaagtggaagaa
ttgaagaaacttgttgctccacatatgcttcgaaggcttaaaaaggatgcaatgcaaaat
attccccctaagactgaacggatggttcctgttgagttgtcatccattcaagcagaatac
tatcgtgcgatgctgacaaagaactatcagatattgcgaaatgttgggaaaggggttccc
caacaatcaatgctaaatattgtgatgcagttgagaaaagtttgcaatcacccatatctc
attcctggtactgaacctgattctggttcggtagaattccttcatgaaatgcggataaaa
gcctcagccaagttgactttgttgcattctatgcttaagattctatacaaggaaggccat
cgagtccttattttctcacagatgaccaaacttcttgatatcctcgaagattatctgact
atagaatttggatctaaaacatatgagagagtggatggctctgtctcagtggctgatcgc
caatcagcaatcgcacgctttaaccaagataaaagtcgattcgtcttcttgttgtcgaca
cgctcttgtggccttgggatcaatttggcaactgctgacaccgtcattatctatgattct
gatttcaatccgcatgctgatattcaagctatgaatcgtgcacatcgaattggacagtca
aagagacttttggtatatcgacttgtagttcgtgctagcgttgaagagcgcatcttgcag
cttgcaaagaagaaactgatgcttgatcagctttttgtgaataagtctggatcacaaaaa
gaagtagaggatattttgaaatggggaacagaagaactttttaatgattcttatagtatg
tatgggaaagatacagtggaatttaataataacaaagatgaggcagtaatagatacagaa
aataagcacaggaagagagctggtagtctaggggatgtgtaccaggacaaatgtactgaa
agcagtagcaggatcatgtgggatgaaaatgctattttgaaattgcttgaccgttcaaac
cttcagtctggatcaactgataatgcggaaggggatttggagagtgatatgcttggctca
gtgaaggcacttgaatggaatgatgaaccaacagaagaacaagggggagctgaatctcct
cccattgttaccgatgaaatctttgcacaaagttctgagagaaaagaggataatgtggtt
gctggaatggaagaaaatgaatgggatagacttttacgattgagatgggaaaagtatcaa
gtggaggaggaagcagctcttggtcgagggaagcgtcagcgaaaagctgtttcttatagg
gaagcatatgcttcacacccaagtgaaacattgactgagagttgtggtgatgaggaacga
gagctggaaccagagccggagcgtgaatatacaccagcaggacgtgcactaaaagcaaaa
tttgctaaactccgtgctagacaaaaggaacggcttgctcagaggaatgcaggtttagaa
tcttgtcttggtgggggaatgcctgaacctgattctgtccctaaccatccttccataaac
tccaaagaaggggatgtaactgaattacatcaagctgtcagtgagaagatttcagtaatt
gacttagaggatgacaaattcattcagccagtagatggtccgaagtgtaagaatgacatc
cctttaaggctgggcagaatgtcaaagtacaaaatgagtagtcatctggattttcctttc
aatccacttggtcatccatctcctgacattttccttcctagtcaccattttcaaagcacg
agctacacaaactcagtgcccaccagcaacttgttaccagtcctgggactttgcgctccc
aatgttagtcaagtggagccatcataccgaaacttgttaagagcaaatggcagacaaagt
aagctgggacctggaccagagtttccattcagtctggcttcttgcttcaggacttcaatt
gagacagatgggaaaaatcaggacagcttggacaaagcaaagaaaccagatgcgactgct
gaagttttgcaacagtgtcttaagaacagcatcccggataactgtcctccatatcttcca
tgcccgccagctgtccaaggaaaagcttccgaacgtttagaaagttgtggttctactttc
tctgattttcaagaaaagatggcattgccaaacttgccatttgatgaaaacatgctgtcc
agattctcactttcagcaaagaccgcacccccttcacatcttgactacctacctagcttg
tcattaggtagcagaccagaaactgttaatggcttcatgcaggacttcccaacaatacca
ttgctgcccagcttaaaattcccagcacaagatgcagtgagatataatcaggacagggag
atgccacccacattggatcttggacagatgccagccactttttcctcatttcctgaaaaa
cataagaaggtgcttgaaagcataatgatgaggaccggatctggatcaagcaatatgttt
agaaagaaattgaaaaaagaaagctggtctgaagatgaacttgattttttgtggattggt
gttcgtagacatggacggggaaattgggagtccatgattagagacccaaggttaaaattt
tccaaatataaaacatcagaagatttgtcagcaaggtgggagaaggaacaactcaagctc
tttgatgggtcagtctttccggttccaaaatcaaccaagccgacaaagtctactagatct
tcattatttccaggcatttctgatggaatgatggcccgggccttgcaaggtagtagactc
actacacccccaaagtttaaggcccacctgacagacatgaaattgggttttggcgatctt
atgcccagcgtgccacattttgaaacatctgatagactcggtttgcaaaatgaccatttt
gtatctatgccaacttggaatcatgagaagtattgggcaaatcatcctggggagtcttct
gccggaccttgtgaagggctgggaacttcttcaaatgtacccattgacaagccatttctg
ctcaattcatatggaaccagttgcttaggttctttaggtttgaattgctcgaccagcttt
gatgtacagataaaagaggatgaacagtgtgctaataagtatgggaagtttcctagcctc
ttggataaatcgctaaatgttttacgtgattcccatcacaatttaggagttggcgaatct
gtcagctcagtattgcttcctgattccaacaaaaggctgaatctttcacacttaaagggc
gaagaagcagctggatgtagttcttcaaaggacaagctaccccattggttacgagaagct
gtgagtgcacccgcaaaacccccagatcccgacttgccacccactgtatcagcaattgca
cattcagttcgattgctatatggagaagataagccaaccatccctccatttgtgatccca
gctccacctccttccataccaaaggatccaagacggactctaaagaagaaaaagaaacgg
agctcacatttgtcgaggcgggtaccgccagacattgctgaaaggagtcaggaattccaa
agaaacctccatggtgataatgctggttcaagctcaatctcattggctccaacattttca
ctgcatccagaatcgaccatgggaacaacagcgcttccacagattgaatctgacctgaac
ttgcgtcctctaaatttgaatatgatgaactcatcatcctctttagcacatttacaccag
cagaagaaaaccagcatgggattgtccccctctcccgaggtgcttcagctggtagcatca
tgtgttgctcctgtcccacatatgtcatctatttctggcatgacgagctcaagcttcatt
gatagtaagcttgaggtgtcaaaatctgttgacctagttggatttccagacccacaggat
gcatttgaaaaagggaaagctgagcagagctcaccttttaatgtatggcgttcaaatccc
ggagagaaattacaagaccatcctgaaagtggagattctagtaaaactcaatcagatccc
cttcggactgaacggcctgatggtgaggatatatcatctgagggcactgtctcagatcat
cctgtaagtgaccatgaatcatag
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integrated database retrieval system
