Carya illinoinensis (pecan): 122276633
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Entry
122276633 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122276633
KO
K06100
symplekin
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122276633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122276633
03019 Messenger RNA biogenesis [BR:
cill03019
]
122276633
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122276633
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122276633
U7-dependent histone pre-mRNA processing factors
122276633
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
122276633
NCBI-ProteinID:
XP_042942438
LinkDB
All DBs
Position
9:41686766..41713595
Genome browser
AA seq
1339 aa
AA seq
DB search
MVAMMMATNKREKLASLINSAKSASNIPSKLESLRQLKRNLLHEDPSLLSEFLSPLLDLQ
SDRFSPVRKLVAEVIGEIGLKHMEFLPEIVRALITVVDDGTPAVARQAITSGIDLFRSTL
ERVAIQGLYSSELNSSVESSWAWMLKFKDKIYSMAFQLGSGGTRLLALKFVEAVILLYTP
DPNGLSEPPTNEGESVQFNISWLRAGHPVLDVGDLSIEATHSLGLLLDQLRFPTVRSLSN
SAIIVLINSLSAIAKQRPAFYGRILPVLLGLEPSSSVINGMHVSAAHHALKGAFLTCLKC
THPGAAPWRDSLVDALREMKAGGLAEQTLHQFFKITGSLGEGKEDSPVPKEEKTTCKAGD
AMDSNLGRKRSGAPENSDPAEDRDMPEKRMKASPSVSEESTRELDKSITIPQDGIPSTRP
TTSRGDVDTGPAQQLVAMFGALVAQGEKAIGSLEILISSISADLLAEVVMANMRYLPPNL
SKAEGDDLLMNMTIVGSDTDAKYPPSFLADVLSLSSTFPPIVSLLDAHQSMSNEIVKPHC
KEEHAASVADSLVSHSGMDHDSDNAILPAGVPASSDVVSSEMEKGCFPITSDSHDMGNLE
SEIPGLDSAALTDGLSETQVASSLASTDLEDASQEQVTSLVQTTLNLHSSMSTDRSEELS
PKAAVTDVSSLVSSTETSVGLSFHVILPKMSAPVVYLDDEQKDHLQKLAFMRIVEAYKQV
AVAGGAQVRFSLLAYLGFEFPLELDPWKLLQKHILEDYMGHEGHELTLRVLYRLYGEQVE
DRDFFSYTAAASEYEKFLLTVAETLRDSFPPSDKSLSRLFDEAPDMPKSVLKLLESMCSP
GNFDKAEELQSGDRVTQGLSVVWRLIIQRPPIRDVCLKIALQSAVHHLEEVRMKAIRLVA
NKLFPLSSIAKQIESFAKEMLFSVIGEDVADGIDTEGSVREAQKDSEIEKPVDERLSVSA
NSKDISSDTHQSSMCQSVSSLSVSEAQRCMSLYFALCTKKHSLFREIFIVYKSMSKTVKQ
AIHHQIPVLVRTMGSSSDLLEIISDPPSGSKNLLMQVLQILTDGTIPSSELLFTIRKLYD
SKVKDLEIVIPILPFLPKDEVKLIFPHVVNLPPEKFQSVLARILKGLSHSGPVLTPAEVL
IAIHGIDPEKDGIPLKKVTDACNACFEQRQVFTQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIGAFPALVDFIMEILSRLVSKEIWKYPKLWVGFLKCAFLTKPQSFDVLLKLPPAQLENA
LARTAALKAPLITHASQPNIRSSLPRSVLAVLGIVPDSETSSQAQTGVAPDSQNSSQVQT
SQADSGHMSNSDKVVTEKS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaatgatgatggccacgaacaagagggaaaagctcgcgagtctgataaattcg
gccaagtccgcttccaatataccgtccaaacttgaatccttgcgtcaattaaagcggaat
ttgctccatgaagacccttccttgctctccgagtttctctctcccctcctcgacctccag
tccgaccggttcagtccggttcgcaagctcgttgcagaggtgataggtgaaatcggcttg
aagcacatggaattccttcctgaaattgtacgtgcgctgattactgttgtggacgatggt
acaccagctgttgctcgacaagccatcactagcgggattgatttatttcgttcaactctt
gaaagagttgcaattcagggtctctattcaagtgagttgaacagttcagttgagtcatca
tgggcatggatgttaaaattcaaggacaaaatatattccatggcttttcagctgggaagt
ggtggaacaaggttgctggcactgaaatttgttgaagctgtcattcttctttatacacct
gatcctaatggcttgtcagagcctcctactaatgaaggagagtctgtgcaatttaatata
tcttggcttcgtgcgggtcatccagtgcttgatgttggagatttgtcaattgaagccact
catagtttgggtctattgcttgatcagctgaggtttccaacagtcagatctcttagtaac
tctgcaataattgtgctcattaatagtctttcagcaattgcaaaacaaaggcctgcattc
tatggacgcattctgccagttttacttggtttggagccctcaagctctgtaatcaatgga
atgcatgtttctgcggcacatcatgctttaaaaggcgccttcctcacctgcttgaaatgt
actcacccgggtgctgcaccgtggcgagatagtttggtggatgccttgagagagatgaaa
gctggaggattggcagagcaaactcttcaccaatttttcaagattactggaagtctaggt
gaaggaaaagaagattccccagttcctaaggaagagaagaccacatgtaaagcaggtgat
gctatggatagtaatttgggaagaaaaagatctggagcaccagaaaacagtgatccggct
gaagatagagatatgcctgaaaagcgtatgaaagcatcacctagtgtctcagaggaatct
actagagagttggataaaagtatcacaattcctcaagatggaattccatcaactcggcca
accacttccagaggagatgttgatactggacctgcgcagcaacttgttgctatgtttggt
gccttggttgctcaaggtgaaaaagccattggctctttagagattcttatatcaagtatc
tctgctgacttgctagctgaggtagtgatggctaatatgcgttaccttcctcccaatctt
tccaaagctgaaggagatgatttactgatgaacatgactatagttgggagtgatactgat
gctaaatatcctccatcatttttagcagacgttctgtcactttctagtactttcccacca
atagtctcactgttagatgctcaccagtctatgtccaatgaaatagtgaaacctcattgc
aaggaagaacatgctgcttctgtagctgatagtcttgtttcacattctggcatggaccat
gattctgacaatgcaattttgcctgctggtgtaccagcttcttctgatgttgtttcatct
gaaatggagaaaggttgttttccaattacatctgatagccatgacatggggaatctagag
agtgagatacctggtttggattctgctgctcttactgatggattgtcagagacacaggtt
gcttcctccttggcctccactgatctggaagatgccagtcaagagcaagttacaagtttg
gttcagacaacgctgaatttacattcatcaatgtcaacagacaggtctgaggaacttagc
ccaaaggcagctgttacagatgtcagcagtctggtctcatcaacagaaacttctgttggg
ttgtcttttcatgtcatcttgcccaagatgtcagcacctgttgtttaccttgacgatgaa
cagaaggatcatttgcagaaattggcttttatgcgcattgttgaggcatataagcaagtg
gcagttgctggaggtgcacaagtccgcttttcactgcttgcatatttagggtttgagttt
cccttggagctagacccatggaaactgttacaaaagcatatactggaagattacatgggt
catgagggacatgagttgaccttgcgtgtcctctacaggttatatggcgagcaagtagag
gaccgtgacttcttttcttacacagctgcggcttctgaatatgaaaaattccttcttact
gtggcagagacacttagagattcttttccaccttcagataaatcattaagtagattgttt
gatgaagctcctgatatgccgaagtcagttttgaaattactagaaagcatgtgttctcct
ggaaactttgataaagctgaggagttacaaagtggggatcgcgttactcaaggtctcagt
gttgtgtggagattgattatacagaggcctcccattcgagatgtctgcttgaaaattgcc
ttacaaagtgcagtccatcacttggaggaagtgcgtatgaaggcaatacgtctggtggca
aacaagctttttcctttatcatccattgcgaaacagattgaaagctttgcaaaagaaatg
ctgttctctgtaataggtgaggatgtggcagatggaattgatactgaaggatcagtcaga
gaagcacagaaggattctgagattgaaaaacctgtggatgaacgcctgtcagtgagtgcc
aacagtaaggatatttcctctgatactcatcaatcgagcatgtgtcagagtgtttcctcc
ctttcagtctcagaggcacagcgttgcatgtctctgtatttcgccttgtgtaccaagaag
cactcccttttccgcgaaatattcatagtctataagagcatgtcaaagacggttaagcag
gccattcaccaccagattccagtactagtccgtactatgggctcatcatcagatctactt
gaaataatttcagatcctccaagtggaagcaagaaccttctgatgcaggttttgcaaata
ctgacagatgggacgattccctcctcagaattattgttcacaataagaaagttatatgat
tcaaaagtaaaggatttagagattgttatcccaatcttgccattccttccaaaggatgag
gttaagctgatttttccccatgttgtgaatcttccaccagaaaagttccagtcagtactt
gcccgcatactaaagggattgtctcattcgggtccagtgctcactccagctgaagtgcta
attgctatccatgggattgaccccgaaaaagatggaattcccttgaagaaggtcacagac
gcttgcaatgcatgttttgagcagaggcaagtattcacccaacaagtgcttgcaaaagtt
ttgaatcaattggttgagcaaattcctcttcctttattgttcatgcgaaccgtattacaa
gccataggtgctttcccagcattggtggattttataatggagattctgtctcgtcttgtg
agcaaggagatttggaaatacccaaagttgtgggtaggattcttgaagtgtgctttcttg
acaaagcctcagtcatttgatgtgttgcttaagctacctccagcacagctagaaaacgca
ttggctagaactgcagcactgaaagcaccattgatcactcatgctagccaaccaaacatc
cgttcttcccttccaagatctgttttggcggttcttggaattgtaccagattctgagact
tcaagtcaagcacaaactggagttgcccctgattctcagaattctagtcaggtgcaaaca
agtcaggctgacagtggacatatgagtaactcggataaggtggtgacagagaaatcttaa
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